Pseudomonas petroselini

General Information

Pseudomonas petroselini is a fascinating microorganism that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This bacterium was originally isolated from the rhizosphere of parsley (Petroselinum crispum), which hints at its possible role in plant-microbe interactions. One of the most intriguing aspects of Pseudomonas petroselini is its ability to produce a variety of secondary metabolites. These compounds can have antimicrobial properties, making this bacterium a potential candidate for biocontrol applications in agriculture. The production of these metabolites also suggests that Pseudomonas petroselini could be a valuable source of novel antibiotics, which is particularly important in the context of rising antibiotic resistance. Additionally, Pseudomonas petroselini exhibits a remarkable capacity for biodegradation. It can break down complex organic compounds, which positions it as a promising agent for bioremediation efforts. This ability to degrade pollutants could be harnessed to clean up contaminated environments, contributing to environmental sustainability. From a research perspective, the genetic and metabolic pathways of Pseudomonas petroselini are of significant interest. Understanding these pathways can provide insights into the mechanisms of secondary metabolite production and biodegradation, potentially leading to the development of new biotechnological applications. In summary, Pseudomonas petroselini is a bacterium with considerable potential in both agricultural and environmental biotechnology. Its unique characteristics make it a valuable subject for further research and exploration.

Pseudomonas petroselini is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This species is primarily associated with plants, particularly those in the Apiaceae family, such as parsley, which is reflected in its name. What makes Pseudomonas petroselini particularly interesting is its ability to promote plant growth through mechanisms such as nitrogen fixation and the production of phytohormones. This characteristic positions it as a valuable candidate for use in sustainable agriculture, where it could enhance crop yields and reduce the need for chemical fertilizers. Another notable feature of Pseudomonas petroselini is its metabolic versatility. This bacterium can utilize a wide range of organic compounds as carbon sources, which allows it to thrive in diverse environments. Its adaptability to various substrates makes it a subject of interest for bioremediation studies, where it could potentially be employed to degrade environmental pollutants. Furthermore, Pseudomonas petroselini is part of the larger Pseudomonas genus, known for its diverse array of secondary metabolites, including antibiotics and other bioactive compounds. Research into these metabolites could lead to the discovery of new therapeutic agents, making this organism a promising candidate for pharmaceutical applications. In summary, Pseudomonas petroselini stands out due to its plant growth-promoting abilities, metabolic flexibility, and potential for biotechnological applications, making it a valuable organism for both ecological and industrial research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas petroselini

NCBI ID

2899822

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/166/595/GCA_021166595.1_ASM2116659v1

File for sequence-based predictions:
GCA_021166595.1_ASM2116659v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas petroselini is a Gram-negative bacterium that has been associated with various clinical implications, particularly in the context of infections and pathogenicity. It is known to inhabit diverse environments, including soil and water, and can be an opportunistic pathogen in humans, especially in immunocompromised individuals. Clinical relevance includes its potential role in nosocomial infections, where it can cause pneumonia, wound infections, and bacteremia. The organism exhibits a remarkable ability to form biofilms, which contributes to its virulence and resistance to antimicrobial agents. One of the significant concerns regarding Pseudomonas petroselini is its antimicrobial resistance. It has been documented to possess mechanisms that confer resistance to multiple classes of antibiotics, including beta-lactams and aminoglycosides. This resistance complicates treatment options and poses a challenge in clinical settings, particularly in patients with underlying health conditions. In terms of immune evasion, Pseudomonas petroselini can produce various virulence factors, such as exopolysaccharides, which help it evade the host's immune response. This ability to resist phagocytosis and survive in hostile environments makes it a formidable pathogen. While Pseudomonas petroselini is not as widely studied as other members of the Pseudomonas genus, its presence in clinical specimens highlights the need for ongoing surveillance and research to better understand its role in human health and disease. Further studies may also explore potential medical applications, such as its use in bioremediation or as a model organism for studying bacterial pathogenesis.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas petroselini is a bacterium commonly associated with various soil environments and plant-associated habitats. This microorganism thrives particularly in agricultural soils and rhizospheres, where it plays a crucial role in nutrient cycling and plant health. Its ability to degrade organic compounds allows it to contribute to the biodegradation of pollutants, making it an important player in bioremediation efforts in contaminated soils. In the rhizosphere, Pseudomonas petroselini engages in symbiotic relationships with plant roots, promoting plant growth through the production of phytohormones and enhancing nutrient uptake. This interaction not only benefits the plants but also helps in maintaining soil health and fertility. Additionally, this bacterium is known for its adaptability to various environmental conditions, including varying pH levels and moisture content, which allows it to colonize diverse habitats. Its presence in marine environments has also been documented, where it contributes to the degradation of organic matter in coastal sediments. Overall, Pseudomonas petroselini exemplifies the intricate relationships within terrestrial ecosystems, highlighting its role in both soil health and plant productivity.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas petroselini has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Pseudomonas petroselini is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes are valuable in the production of biofuels, as they can facilitate the breakdown of complex organic materials into simpler compounds that can be fermented into ethanol or other biofuels. In the realm of waste management, Pseudomonas petroselini has demonstrated capabilities in biodegradation, particularly in the breakdown of pollutants and organic waste. This microorganism can metabolize various hydrocarbons, making it useful in the treatment of contaminated soils and water, thus contributing to environmental remediation efforts. Furthermore, in pharmaceutical development, Pseudomonas petroselini is being explored for its potential in the production of bioactive compounds. These compounds can serve as precursors for the synthesis of antibiotics or other therapeutic agents, showcasing the organism's versatility in the pharmaceutical industry. Overall, the applications of Pseudomonas petroselini span across biotechnology, waste management, and pharmaceutical development, with its involvement in processes such as fermentation, enzyme production, and waste treatment highlighting its industrial significance.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	meta-llama/llama-3-8b-instruct:nitro	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	google/gemini-pro	google/gemini-pro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	true	false	false	false	true	false	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	true	true	true	true	true	false	true	false	false	true	true	true	true	false	false	true	true	true	true	true	true	false	false	true	true
Host association	FALSE	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	N/A	true	true	false	true	true	true	false	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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