Vibrio floridensis

General Information

Vibrio floridensis is a fascinating microorganism that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This species was first isolated from marine environments, specifically from the coastal waters of Florida, which is reflected in its name. One of the most intriguing aspects of Vibrio floridensis is its ability to thrive in saline conditions, making it an important subject of study for understanding marine microbial ecology and the adaptations required for survival in such environments. Bioluminescence is a notable feature of many Vibrio species, and while Vibrio floridensis itself is not known for this trait, its close relatives are, making it a valuable organism for comparative studies in the field of microbial bioluminescence. Researchers are particularly interested in the genetic and biochemical pathways that enable bioluminescence, and studying Vibrio floridensis can provide insights into the evolutionary history and functional mechanisms of this phenomenon. Another significant aspect of Vibrio floridensis is its potential role in bioremediation. Marine environments are often contaminated with pollutants, and certain Vibrio species have shown promise in breaking down harmful substances. Investigating the metabolic capabilities of Vibrio floridensis could lead to the development of new strategies for cleaning up marine pollution. From a medical perspective, while Vibrio floridensis is not typically associated with human disease, understanding its interactions with other marine organisms, including pathogenic Vibrio species, can provide valuable information for managing and preventing infections caused by more harmful relatives. In summary, Vibrio floridensis is a microorganism of considerable interest due to its ecological significance, potential biotechnological applications, and the insights it offers into the broader Vibrio genus. Its study not only enhances our understanding of marine microbial life but also opens up possibilities for innovative solutions to environmental and health-related challenges.

Vibrio floridensis is a fascinating marine bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This organism is primarily found in coastal waters, particularly in the southeastern United States, where it thrives in warm, brackish environments. What makes Vibrio floridensis particularly interesting is its ability to produce a variety of bioactive compounds, including antimicrobial substances that can inhibit the growth of pathogenic bacteria. One of the most notable features of Vibrio floridensis is its role in the marine ecosystem, where it contributes to nutrient cycling and the degradation of organic matter. This bacterium is also known for its symbiotic relationships with marine organisms, such as certain species of fish and invertebrates, which can benefit from its presence. From a research perspective, Vibrio floridensis is valuable for studying the genetic and biochemical pathways involved in the production of its bioactive compounds. The potential for these compounds to be developed into novel antibiotics or other therapeutic agents makes this organism a subject of significant interest in pharmaceutical research. Furthermore, its adaptability to varying environmental conditions provides insights into microbial resilience and the impacts of climate change on marine ecosystems. In summary, Vibrio floridensis stands out not only for its ecological importance but also for its potential contributions to biotechnology and medicine, making it a promising candidate for further study in various scientific fields.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Vibrionales

Family: Vibrionaceae

Genus: Vibrio

Species: Vibrio floridensis

NCBI ID

2908007

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/852/965/GCA_021852965.1_ASM2185296v1

File for sequence-based predictions:
GCA_021852965.1_ASM2185296v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Vibrio floridensis is a Gram-negative bacterium that has been associated with various clinical implications, particularly in relation to gastrointestinal infections and wound infections. It is part of the Vibrio genus, which includes several species known to cause disease in humans, especially in coastal regions where the organism is prevalent in warm seawater. Clinical relevance arises from its potential to cause vibriosis, a disease characterized by symptoms such as diarrhea, abdominal cramps, nausea, vomiting, and fever, particularly in individuals with compromised immune systems or underlying health conditions. Pathogenicity is attributed to its ability to produce toxins and adhere to intestinal epithelial cells, leading to inflammatory responses and cellular damage. The organism is also known to be associated with shellfish consumption, where it can be ingested and lead to severe gastrointestinal illness. In terms of antimicrobial resistance, there are concerns regarding the increasing resistance of Vibrio species to commonly used antibiotics, which complicates treatment options for infected individuals. This resistance can be attributed to various mechanisms, including the acquisition of resistance genes and the ability to form biofilms, which protect the bacteria from antibiotic action. Furthermore, Vibrio floridensis has been implicated in outbreaks linked to contaminated water and seafood, highlighting its public health significance. Understanding its interaction with the human body, including its immune evasion strategies, is crucial for developing effective prevention and treatment strategies. Overall, while Vibrio floridensis is not as widely recognized as some other Vibrio species, its role in human health and disease underscores the importance of monitoring and researching this organism.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Vibrio floridensis is a marine bacterium commonly found in coastal waters and estuarine environments. This organism thrives in brackish waters, where it plays a significant role in the nutrient cycling of these ecosystems. It is often associated with mangrove forests and seagrass beds, where it contributes to the breakdown of organic matter and supports the overall health of these habitats. In terms of ecological interactions, Vibrio floridensis is known for its symbiotic relationships with various marine organisms, including certain species of fish and invertebrates. These interactions can enhance the host's health by providing protection against pathogens or aiding in digestion through the breakdown of complex organic materials. Additionally, Vibrio floridensis exhibits remarkable environmental adaptability, allowing it to thrive in varying salinity levels and temperatures, which is crucial for its survival in dynamic coastal ecosystems. Its presence is often indicative of the overall health of the marine environment, making it an important organism for ecological monitoring and research. Overall, Vibrio floridensis is a vital component of the marine biome, contributing to both the ecological balance and the health of its surrounding environments.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Vibrio floridensis has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Vibrio floridensis is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes are particularly valuable in the food industry for fermentation processes, enhancing flavor and preservation of food products. In the realm of waste management, Vibrio floridensis has demonstrated capabilities in biodegradation, particularly in the breakdown of organic pollutants in marine environments. This characteristic makes it a candidate for bioremediation efforts, where it can help in the detoxification of contaminated water bodies. Moreover, the organism has been explored for its potential in biofuel production. Its metabolic pathways can be leveraged to convert organic materials into biofuels through fermentation, providing a sustainable alternative to fossil fuels. In pharmaceutical development, Vibrio floridensis is of interest due to its production of bioactive compounds that may have therapeutic properties. Research is ongoing to isolate these compounds for potential use in drug formulation. Overall, Vibrio floridensis presents a multifaceted approach to industrial applications, particularly in biotechnology, waste management, biofuel production, and pharmaceutical development, showcasing its versatility and importance in modern industrial processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro-1.5	openai/gpt-4o	openai/gpt-4o	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	google/gemma-7b-it	google/gemma-7b-it	google/gemini-pro	google/gemini-pro	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	N/A	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗
Biosafety level	biosafety level 2	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓
Health association	N/A	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Host association	N/A	true	true	true	true	true	true	true	true	false	true	false	false	false	false	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	beta	beta	beta	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	beta	beta	N/A	N/A	beta	beta	alpha	alpha	gamma	gamma	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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