Gordonia zhenghanii

General Information

Gordonia zhenghanii is a fascinating microorganism belonging to the genus Gordonia, which is known for its diverse metabolic capabilities and environmental resilience. One of the most intriguing aspects of G. zhenghanii is its ability to degrade a wide range of complex organic compounds, including pollutants such as polycyclic aromatic hydrocarbons (PAHs) and rubber. This makes it a valuable candidate for bioremediation efforts aimed at cleaning up contaminated environments. Another noteworthy characteristic of G. zhenghanii is its production of bioactive compounds, which have potential applications in pharmaceuticals and biotechnology. The organism's metabolic versatility is underpinned by a rich repertoire of enzymes that can break down various substrates, making it a subject of interest for researchers studying microbial ecology and industrial microbiology. From a taxonomic perspective, G. zhenghanii is part of the Actinobacteria phylum, which includes many other industrially and medically significant bacteria. Its ability to thrive in diverse environments, including soil and water, further underscores its ecological importance. In summary, Gordonia zhenghanii stands out due to its biodegradation capabilities, production of bioactive compounds, and ecological versatility, making it a valuable organism for both environmental and industrial applications.

Gordonia zhenghanii is a fascinating actinobacterial species that has garnered attention due to its unique metabolic capabilities and ecological significance. This microorganism is particularly notable for its ability to degrade a variety of complex organic compounds, including those found in industrial waste, making it a potential candidate for bioremediation applications. Its capacity to break down pollutants such as aromatic hydrocarbons and other xenobiotic compounds highlights its value in environmental biotechnology. One of the most interesting aspects of Gordonia zhenghanii is its production of unique lipids, which can be utilized in various industrial processes. These lipids are not only important for the organism's own cellular functions but also have potential applications in the production of biofuels and biodegradable materials. The ability to produce such compounds positions Gordonia zhenghanii as a valuable organism in the search for sustainable alternatives to petroleum-based products. Furthermore, Gordonia zhenghanii has been studied for its role in the natural degradation processes within soil and aquatic environments. Its presence in these ecosystems contributes to nutrient cycling and the overall health of microbial communities. This ecological role underscores the importance of understanding and preserving such microorganisms, as they play a critical part in maintaining environmental balance. In summary, Gordonia zhenghanii stands out due to its remarkable biodegradation capabilities, unique lipid production, and ecological contributions, making it a significant subject of research in both environmental science and industrial applications.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Mycobacteriales

Family: Gordoniaceae

Genus: Gordonia

Species: Gordonia zhenghanii

NCBI ID

2911516

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/738/965/GCA_021738965.1_ASM2173896v1

File for sequence-based predictions:
GCA_021738965.1_ASM2173896v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia zhenghanii is a member of the genus Gordonia, which is known for its environmental resilience and ability to degrade various organic compounds. While Gordonia zhenghanii is primarily recognized for its role in bioremediation, it has also been associated with human health implications. Clinical relevance arises from its potential to cause infections, particularly in immunocompromised individuals. Reports have indicated that it can lead to opportunistic infections, including skin and soft tissue infections, as well as pulmonary infections in patients with underlying lung conditions. One of the notable aspects of Gordonia zhenghanii is its antimicrobial resistance. It has shown resistance to multiple antibiotics, which complicates treatment options for infections it may cause. This resistance is often attributed to its ability to produce beta-lactamases and other resistance mechanisms that allow it to survive in hostile environments, including those created by antibiotic treatments. In terms of immune evasion, Gordonia zhenghanii may employ strategies that allow it to persist in the host despite the immune response. This includes the production of biofilms, which can protect the bacteria from phagocytosis and the action of immune cells. While there are no widely recognized medical applications such as probiotics or vaccines specifically for Gordonia zhenghanii, its role in bioremediation highlights its potential utility in environmental health. However, the clinical implications of its pathogenicity and resistance mechanisms necessitate further research to fully understand its impact on human health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Gordonia zhenghanii is a species of actinobacteria that is primarily associated with soil environments and wastewater treatment systems. This microorganism thrives in aerobic conditions, often found in environments rich in organic matter, such as compost heaps and decaying plant material. Its ability to degrade complex organic compounds, particularly xenobiotics and polycyclic aromatic hydrocarbons (PAHs), makes it a significant player in bioremediation processes, where it helps to detoxify contaminated sites. In terms of ecological interactions, Gordonia zhenghanii exhibits symbiotic relationships with various soil microorganisms, contributing to nutrient cycling and enhancing soil health. It can also form biofilms, which are essential for its survival in aquatic environments and industrial wastewater. These biofilms provide a protective matrix that allows the bacteria to thrive in harsh conditions, such as high concentrations of pollutants. Overall, Gordonia zhenghanii plays a crucial role in maintaining the balance of its ecosystems by participating in the breakdown of pollutants and contributing to the overall health of soil and aquatic biomes.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia zhenghanii has shown significant potential in various industrial applications, particularly in the fields of biotechnology, waste management, and bioremediation. This actinobacterium is known for its ability to degrade a wide range of environmental pollutants, making it a valuable asset in waste treatment processes. Its enzymatic capabilities allow it to break down complex hydrocarbons, which is particularly useful in the remediation of oil spills and other hydrocarbon-contaminated sites. In the realm of biotechnology, Gordonia zhenghanii is recognized for its role in the production of biofuels. The organism can utilize various substrates, including waste oils and fats, through fermentation processes to produce biodiesel. This not only contributes to sustainable energy solutions but also aids in the reduction of waste. Furthermore, the unique metabolic pathways of Gordonia zhenghanii have been explored for pharmaceutical development, particularly in the production of bioactive compounds. Its ability to synthesize specific enzymes can be harnessed for the development of novel drugs and therapeutic agents. Overall, Gordonia zhenghanii exemplifies the potential of microorganisms in addressing environmental challenges and contributing to sustainable industrial practices through its diverse applications in biodegradation, enzyme production, and biofuel generation.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	mistralai/mistral-7b-instruct	google/gemini-pro	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	google/gemma-7b-it	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	google/gemini-pro-1.5	google/gemini-pro-1.5	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerotolerant ✗	aerobic ✓	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	false	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	false	false	true	true	true	true	false	false	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	false	true	true	true	false	false	true	true	false	false	false	false	true	true	false	false	true	true	true	true	false	false	false	false
Host association	N/A	true	true	true	false	false	false	false	true	false	false	true	true	false	false	false	false	false	false	false	false	true	true	true	true	true	true	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	N/A	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	coccus	coccus	bacillus	bacillus

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