Brachybacterium atlanticum

General Information

Brachybacterium atlanticum is a fascinating microorganism that was first isolated from deep-sea sediments in the Atlantic Ocean. This bacterium is particularly interesting due to its unique habitat, thriving in the extreme conditions of the deep sea, which includes high pressure, low temperature, and limited nutrient availability. The ability of Brachybacterium atlanticum to survive and adapt to such harsh environments makes it a valuable subject for research in extremophiles and their potential applications. One of the most notable characteristics of Brachybacterium atlanticum is its metabolic versatility. It has been observed to utilize a wide range of organic compounds, which suggests that it plays a significant role in the biogeochemical cycles of its native deep-sea ecosystem. This metabolic flexibility also opens up possibilities for biotechnological applications, such as bioremediation, where the bacterium could be employed to degrade pollutants in challenging environments. Additionally, Brachybacterium atlanticum has shown potential in the production of bioactive compounds. Preliminary studies indicate that it may produce novel antibiotics or other secondary metabolites that could be harnessed for pharmaceutical purposes. The exploration of such compounds is particularly exciting given the ongoing need for new antibiotics in the face of rising antibiotic resistance. In summary, Brachybacterium atlanticum stands out due to its adaptation to extreme deep-sea conditions, its metabolic diversity, and its potential for producing valuable bioactive compounds. These characteristics make it a promising candidate for further research in environmental microbiology, biotechnology, and drug discovery.

Brachybacterium atlanticum is a fascinating member of the genus Brachybacterium, known for its unique ecological niche and metabolic capabilities. This microorganism was first isolated from marine environments, specifically from the Atlantic Ocean, which highlights its adaptation to saline conditions. What makes B. atlanticum particularly interesting is its ability to thrive in extreme environments, showcasing its potential for biotechnological applications. One of the notable characteristics of B. atlanticum is its capacity to degrade complex organic compounds, including those found in marine sediments. This ability positions it as a valuable organism for bioremediation efforts, particularly in coastal areas affected by pollution. The metabolic versatility of B. atlanticum allows it to utilize a variety of substrates, making it a candidate for studies focused on microbial ecology and environmental sustainability. Additionally, B. atlanticum has been studied for its potential in the production of bioactive compounds. Research indicates that it may produce antimicrobial substances, which could be harnessed for pharmaceutical applications. This aspect of B. atlanticum opens avenues for drug discovery and the development of new antimicrobial agents, especially in the face of rising antibiotic resistance. In summary, Brachybacterium atlanticum stands out due to its unique marine habitat, metabolic capabilities, and potential applications in bioremediation and pharmaceuticals, making it a significant organism for ongoing research in microbiology and environmental science.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Micrococcales

Family: Dermabacteraceae

Genus: Brachybacterium

Species: Brachybacterium atlanticum

NCBI ID

2911888

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/669/985/GCF_025669985.1_ASM2566998v1

File for sequence-based predictions:
GCF_025669985.1_ASM2566998v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Brachybacterium atlanticum is a member of the genus Brachybacterium, which is known for its role in various environmental and clinical contexts. While specific clinical implications of B. atlanticum are not extensively documented, it is important to note that members of this genus can be associated with human health and disease. Clinical relevance may arise from its potential as an opportunistic pathogen, particularly in immunocompromised individuals. Infections caused by Brachybacterium species, including B. atlanticum, have been reported in rare cases, often linked to skin infections or wound infections. Furthermore, B. atlanticum has been isolated from various environments, including marine and soil habitats, suggesting its ecological versatility. This adaptability may contribute to its ability to survive in diverse conditions, potentially leading to infections in humans under specific circumstances. In terms of antimicrobial resistance, there is limited information available regarding the resistance profiles of B. atlanticum. However, the genus Brachybacterium has shown varying degrees of resistance to common antibiotics, which raises concerns about treatment options in the event of an infection. While B. atlanticum is not widely recognized for any specific medical applications such as probiotics or vaccines, its presence in clinical settings underscores the importance of monitoring environmental bacteria for potential pathogenicity. Understanding the interactions of B. atlanticum with the human body, including any immune evasion strategies it may employ, is crucial for assessing its clinical significance. Overall, while B. atlanticum may not be a prominent pathogen, its potential role in human health and disease warrants further investigation.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Brachybacterium atlanticum is a species of bacteria that is primarily associated with marine environments and coastal ecosystems. This microorganism thrives in saltwater habitats, often found in association with marine sediments and biofilms on various substrates. Its presence is particularly noted in areas where organic matter is abundant, contributing to the breakdown of complex organic compounds through its metabolic activities. In these marine biomes, Brachybacterium atlanticum plays a crucial role in nutrient cycling, particularly in the degradation of organic materials, which supports the overall health of the ecosystem. The bacterium is known to engage in symbiotic relationships with other microorganisms, enhancing the efficiency of nutrient uptake and processing within the microbial community. Additionally, this organism exhibits remarkable environmental adaptations, allowing it to withstand varying levels of salinity and temperature fluctuations typical of coastal regions. Its ability to thrive in such dynamic conditions underscores its importance in maintaining the balance of microbial populations in these marine habitats. Overall, Brachybacterium atlanticum is a significant contributor to the ecological dynamics of marine ecosystems, influencing both the physical and biological processes that sustain life in these environments.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Brachybacterium atlanticum has shown potential in various industrial applications, particularly in the fields of biotechnology, waste management, and pharmaceutical development. This organism is known for its ability to thrive in extreme environments, which can be harnessed for specific industrial processes. In biotechnology, Brachybacterium atlanticum can be utilized in fermentation processes to produce valuable metabolites. Its unique metabolic pathways allow for the conversion of complex substrates into simpler compounds, which can be further processed into bioactive substances or used as precursors in the synthesis of pharmaceuticals. In the realm of waste management, this microorganism has demonstrated capabilities in biodegradation, particularly in the breakdown of pollutants and organic waste materials. Its enzymatic activity enables it to degrade various hydrocarbons and other toxic compounds, making it a candidate for bioremediation efforts in contaminated environments. Furthermore, Brachybacterium atlanticum has potential applications in biofuel production. By participating in fermentation processes, it can help convert biomass into biofuels, such as ethanol or biodiesel, thereby contributing to sustainable energy solutions. Overall, the versatility of Brachybacterium atlanticum in these industrial applications highlights its importance in advancing technologies related to environmental sustainability and pharmaceutical innovation.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerobic ✓	N/A	aerobic ✓	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	false	true	true	true	true	true	false	false	true	true	false	false	false	false	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	false	false	true	true	true	false	true	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	true	true	false	false
Host association	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Hemolysis	N/A	N/A	gamma	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	N/A	coccus	coccus	coccus	bacillus	bacillus	bacillus	coccus	coccus	bacillus	bacillus	coccus	coccus	bacillus	bacillus	bacillus	bacillus	coccus	coccus	coccus	coccus	bacillus	bacillus	coccus	coccus	coccus	coccus	bacillus	bacillus

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