Corynebacterium yonathiae

General Information

Corynebacterium yonathiae is a fascinating microorganism that has garnered attention due to its unique characteristics and potential applications in various fields of research. This bacterium belongs to the genus Corynebacterium, which is known for its diverse metabolic capabilities and ecological versatility. One of the most intriguing aspects of C. yonathiae is its ability to thrive in diverse environments, ranging from soil to clinical settings. This adaptability makes it a valuable subject for studying microbial ecology and environmental microbiology. Researchers are particularly interested in its metabolic pathways, which could provide insights into novel biochemical processes and potential biotechnological applications. Another notable feature of C. yonathiae is its genomic composition. The genome of this bacterium has been sequenced, revealing a wealth of genetic information that can be leveraged for comparative genomics studies. By comparing the genome of C. yonathiae with those of other Corynebacterium species, scientists can identify unique genes and regulatory mechanisms that contribute to its distinctive traits. In addition to its ecological and genomic attributes, C. yonathiae has shown potential in bioremediation. Its ability to degrade various organic compounds suggests that it could be employed in cleaning up contaminated environments. This makes it a promising candidate for environmental biotechnology applications. Furthermore, C. yonathiae is of interest in the field of medical microbiology. While it is not typically associated with human disease, understanding its interactions with other microorganisms and host organisms can provide valuable insights into microbial pathogenesis and symbiosis. Overall, Corynebacterium yonathiae stands out as a microorganism with significant research potential due to its ecological versatility, genomic richness, and biotechnological applications. Its study not only enhances our understanding of microbial diversity but also opens up new avenues for practical applications in environmental and medical sciences.

Corynebacterium yonathiae is a fascinating species of bacteria that has garnered attention due to its unique biochemical properties and potential applications in biotechnology. This organism is notable for its ability to produce a variety of enzymes, which can be harnessed for industrial processes, particularly in the field of biocatalysis. The enzymatic capabilities of C. yonathiae make it a valuable candidate for research into sustainable and efficient bioprocessing methods. One of the most interesting aspects of C. yonathiae is its role in the production of certain metabolites that have implications in pharmaceuticals. The metabolic pathways utilized by this bacterium can lead to the synthesis of compounds that may have therapeutic effects, making it a subject of interest for drug discovery and development. Additionally, C. yonathiae is part of the diverse group of Corynebacteria, which are known for their complex interactions with their environments. This species, like others in its genus, can be studied to understand microbial ecology and the roles these bacteria play in various ecosystems. Research into C. yonathiae can provide insights into microbial diversity and the evolutionary adaptations that allow these organisms to thrive in different niches. Overall, Corynebacterium yonathiae stands out not only for its biochemical potential but also for its contributions to our understanding of microbial life and its applications in biotechnology and medicine.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Mycobacteriales

Family: Corynebacteriaceae

Genus: Corynebacterium

Species: Corynebacterium yonathiae

NCBI ID

2913504

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/027/570/195/GCF_027570195.1_ASM2757019v1

File for sequence-based predictions:
GCF_027570195.1_ASM2757019v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Corynebacterium yonathiae is a member of the genus Corynebacterium, which includes several species known for their clinical significance. While Corynebacterium yonathiae is less studied compared to its relatives, it has been associated with certain clinical implications. Notably, it has been linked to infections in immunocompromised patients, particularly those with underlying health conditions. Its pathogenicity may stem from its ability to evade the immune response, although specific mechanisms are not well-documented. In terms of antimicrobial resistance, there is limited data available, but like many Corynebacterium species, it may exhibit resistance to common antibiotics, which poses challenges in treatment. The organism's role in human health is still being explored, and it may have potential as a probiotic, although this is not yet established in clinical practice. Overall, while Corynebacterium yonathiae is not a primary pathogen, its presence in clinical settings warrants attention, especially in patients with compromised immune systems. Further research is needed to fully understand its clinical relevance and potential applications in medicine.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Corynebacterium yonathiae is a species of bacteria that is primarily associated with soil environments and plant-associated habitats. This microorganism thrives in nutrient-rich soils, often found in agricultural settings where it plays a significant role in the nitrogen cycle. Its ability to fix nitrogen makes it an important contributor to soil fertility, enhancing the growth of various plants by providing essential nutrients. In addition to its role in soil health, Corynebacterium yonathiae can also be found in rhizosphere environments, where it interacts with plant roots. Here, it may engage in symbiotic relationships with certain plants, promoting their growth and resilience against pathogens. This interaction is crucial for maintaining the health of the ecosystem, as it supports plant diversity and productivity. Furthermore, this bacterium exhibits remarkable environmental adaptability, allowing it to survive in varying conditions, including changes in moisture and nutrient availability. Its presence in these biomes underscores its importance in agricultural ecosystems and its potential use in sustainable farming practices. Overall, Corynebacterium yonathiae exemplifies the intricate relationships between microorganisms and their environments, highlighting its role in promoting ecological balance and soil health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Corynebacterium yonathiae has shown potential in various industrial applications, particularly in the fields of biotechnology and pharmaceutical development. This organism is known for its ability to produce specific enzymes that can be harnessed in biocatalysis, which is crucial for the synthesis of complex organic compounds. In the realm of biotechnology, Corynebacterium yonathiae can be utilized in the production of amino acids and other metabolites through fermentation processes. These metabolites are essential for the food and feed industries, providing nutritional supplements and enhancing the growth of livestock. Moreover, its enzymatic activity is being explored for the development of biodegradable plastics, where the organism can help in the breakdown of synthetic materials, contributing to waste management solutions. The ability of Corynebacterium yonathiae to degrade certain pollutants makes it a candidate for bioremediation, where it can be employed to clean up contaminated environments. In pharmaceutical development, the organism's metabolic pathways are being studied for the production of antibiotics and other therapeutic compounds, showcasing its potential in the creation of new drugs. Overall, Corynebacterium yonathiae represents a versatile microorganism with significant promise across multiple industries, particularly in enhancing sustainability and efficiency in production processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro-1.5	meta-llama/llama-3-70b-instruct:nitro	anthropic/claude-3-haiku:beta	mistralai/mixtral-8x7b-instruct:nitro	anthropic/claude-3.5-sonnet	google/palm-2-chat-bison-32k	openchat/openchat-7b	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-flash-1.5	google/gemini-flash-1.5	openai/gpt-4o	openai/gpt-4o	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4	openai/gpt-4	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro	google/gemini-pro
Motility	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain variable ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	aerotolerant ✗	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false	false	false
Biofilm formation	N/A	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Biosafety level	biosafety level 2	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓
Health association	N/A	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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