Streptomyces arenae

General Information

Streptomyces arenae is a fascinating microorganism belonging to the genus Streptomyces, which is renowned for its prolific production of secondary metabolites. One of the most notable characteristics of S. arenae is its ability to produce a wide array of antibiotics and bioactive compounds. This makes it a valuable organism in the field of pharmaceutical research and biotechnology. Streptomyces species are known for their complex life cycle, which includes the formation of a mycelium and spore chains, contributing to their adaptability and survival in various environments. The production of geosmin by S. arenae is particularly interesting, as this compound is responsible for the earthy smell of soil, highlighting the organism's ecological role. Moreover, S. arenae has been studied for its potential in bioremediation due to its ability to degrade various organic pollutants. This capability underscores its environmental significance and potential applications in cleaning up contaminated sites. In summary, Streptomyces arenae stands out due to its antibiotic production, ecological contributions, and bioremediation potential, making it a subject of extensive research and interest in multiple scientific disciplines.

Streptomyces arenae is a fascinating actinobacterium known for its remarkable ability to produce a diverse array of bioactive compounds, including antibiotics and antifungal agents. This organism is particularly interesting due to its ecological role in soil environments, where it contributes to the degradation of organic matter and the cycling of nutrients. The unique metabolic pathways of S. arenae allow it to synthesize secondary metabolites that have significant pharmaceutical potential. One of the standout features of Streptomyces arenae is its production of the antibiotic arenaeomycin, which has shown efficacy against various pathogenic bacteria. This makes S. arenae a valuable organism in the field of natural product research and drug discovery. The ability to produce such compounds not only highlights its potential in combating antibiotic resistance but also underscores the importance of soil-dwelling microorganisms in the search for new therapeutic agents. Additionally, S. arenae exhibits a complex life cycle that includes the formation of aerial hyphae and spores, which are critical for its survival and dispersal in the environment. This life cycle is a subject of interest for researchers studying microbial development and differentiation. The genetic and biochemical pathways involved in the synthesis of its metabolites are also being explored, providing insights into the evolutionary adaptations of actinobacteria. Overall, Streptomyces arenae stands out as a model organism for studying microbial ecology, natural product biosynthesis, and the development of new antibiotics.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Kitasatosporales

Family: Streptomycetaceae

Genus: Streptomyces

Species: Streptomyces arenae

NCBI ID

29301

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/343/545/GCA_022343545.1_ASM2234354v1

File for sequence-based predictions:
GCA_022343545.1_ASM2234354v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Streptomyces arenae is a member of the genus Streptomyces, which is known for its significant role in the production of antibiotics and other bioactive compounds. This microorganism has been studied for its potential in antimicrobial therapy, particularly due to its ability to produce various secondary metabolites that exhibit antibacterial and antifungal properties. The clinical implications of Streptomyces arenae are particularly relevant in the context of pathogenicity and antimicrobial resistance. Pathogenicity: While Streptomyces arenae is primarily recognized for its beneficial applications, there have been instances where it has been associated with infections, particularly in immunocompromised patients. Its ability to survive in various environments suggests that it may have opportunistic pathogenic potential, although documented cases are limited. Antimicrobial Resistance: The genus Streptomyces is known for its complex mechanisms of antimicrobial resistance, which can complicate treatment options. Understanding these mechanisms is crucial for developing effective therapeutic strategies against resistant strains of bacteria. Medical Applications: Beyond its potential pathogenicity, Streptomyces arenae is of interest in the field of probiotics and therapeutics. Its metabolites may be harnessed for developing new drugs, particularly in the fight against resistant bacterial infections. Research into its bioactive compounds continues to reveal promising avenues for novel antibiotic development. In summary, while Streptomyces arenae is primarily recognized for its beneficial roles in antibiotic production, its potential for pathogenicity, involvement in infections, and mechanisms of antimicrobial resistance warrant further investigation to fully understand its clinical relevance.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Streptomyces arenae is a species of actinobacteria commonly found in soil environments and marine sediments. This microorganism thrives in nutrient-rich substrates, where it plays a crucial role in the decomposition of organic matter. Its presence is often associated with terrestrial biomes such as temperate forests and tropical rainforests, where it contributes to nutrient cycling and soil health by breaking down complex organic compounds into simpler forms that can be utilized by plants and other organisms. In addition to its role in nutrient cycling, Streptomyces arenae is known for its ability to produce a variety of bioactive compounds, including antibiotics. This characteristic makes it a significant player in microbial interactions, where it can inhibit the growth of competing microorganisms, thus shaping the microbial community structure in its habitat. The production of these compounds also highlights its potential in symbiotic relationships with plants, where it may enhance plant growth and resistance to pathogens. Furthermore, Streptomyces arenae has been documented in marine ecosystems, particularly in coastal sediments, where it contributes to the degradation of organic materials and the cycling of nutrients in these environments. Its adaptability to varying salinity levels and organic content allows it to thrive in these dynamic habitats, showcasing its ecological versatility. Overall, Streptomyces arenae is an essential component of both terrestrial and marine biomes, influencing nutrient dynamics and microbial diversity through its ecological roles and interactions.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Streptomyces arenae is renowned for its significant contributions to various industrial applications, particularly in the fields of biotechnology, pharmaceutical development, and agriculture. This actinobacterium is primarily recognized for its ability to produce a wide range of bioactive compounds, including antibiotics, which are crucial in the fight against bacterial infections. One of the most notable products derived from Streptomyces arenae is the antibiotic arenaeomycin, which has shown effectiveness against certain strains of bacteria, making it valuable in the pharmaceutical industry for drug development. In addition to its role in antibiotic production, Streptomyces arenae is also involved in biodegradation processes. This microorganism can break down complex organic materials, which is particularly useful in waste management applications. By utilizing its enzymatic capabilities, Streptomyces arenae can help in the biodegradation of pollutants, thus contributing to environmental sustainability. Furthermore, the organism's ability to produce various enzymes makes it a candidate for biotechnological applications. These enzymes can be harnessed in industrial processes such as fermentation, where they facilitate the conversion of substrates into valuable products, including biofuels. The potential for Streptomyces arenae to contribute to biofuel production lies in its metabolic pathways that can be optimized for the generation of bioethanol or other renewable energy sources. Overall, Streptomyces arenae exemplifies the versatility of microorganisms in industrial settings, showcasing its importance in pharmaceutical development, waste management, and biofuel production through its unique biochemical properties and processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro	google/gemini-pro	google/gemma-7b-it	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro
Motility	FALSE	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain variable ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 3 ✗	biosafety level 3 ✗	biosafety level 3 ✗	biosafety level 3 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	false	false	false	false	true	true	false	false	false	false	true	true	false	false	true	true	true	true	true	true	false	false	true	true
Host association	N/A	false	true	false	true	true	false	false	false	true	false	true	false	false	false	false	false	false	true	true	false	false	false	false	true	true	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Spore formation	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Hemolysis	N/A	N/A	N/A	N/A	gamma	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	tail	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	spirillum ✗	spirillum ✗	bacillus ✗	bacillus ✗

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