Gordonia rubripertincta

General Information

Gordonia rubripertincta is a fascinating microorganism belonging to the genus Gordonia, which is known for its diverse metabolic capabilities and environmental resilience. One of the most striking features of G. rubripertincta is its ability to degrade a wide range of complex organic compounds, including pollutants such as polycyclic aromatic hydrocarbons (PAHs) and rubber. This makes it a valuable candidate for bioremediation efforts aimed at cleaning up contaminated environments. Additionally, G. rubripertincta produces carotenoid pigments, which give it a distinctive reddish coloration. These pigments not only contribute to its unique appearance but also have potential applications in the pharmaceutical and cosmetic industries due to their antioxidant properties. From a research perspective, G. rubripertincta is intriguing because of its complex cell wall structure, which includes mycolic acids. This feature is shared with other actinobacteria and contributes to its resilience in harsh environmental conditions. The organism's ability to form stable and robust colonies further underscores its potential for industrial applications. Moreover, G. rubripertincta has been studied for its role in the degradation of natural and synthetic rubber, a process that is of significant interest for recycling and waste management. The enzymes involved in this degradation process are of particular interest to researchers looking to harness and optimize these biochemical pathways for industrial use. In summary, Gordonia rubripertincta stands out due to its bioremediation potential, pigment production, and resilience in diverse environments, making it a valuable subject of study in environmental microbiology and industrial biotechnology.*

Gordonia rubripertincta is a fascinating actinobacterial species known for its unique metabolic capabilities and ecological significance. This microorganism is particularly interesting due to its ability to degrade a variety of complex organic compounds, including those found in industrial waste. This characteristic makes it a valuable candidate for bioremediation efforts, where it can help in the detoxification of contaminated environments. One of the standout features of G. rubripertincta is its production of distinctive pigments, which can impart a reddish hue to cultures. These pigments are not only visually striking but may also have potential applications in biotechnology and the development of natural dyes. Additionally, G. rubripertincta has been studied for its role in the degradation of polycyclic aromatic hydrocarbons (PAHs), which are persistent environmental pollutants. Its enzymatic pathways for breaking down these compounds are of great interest to researchers aiming to develop effective strategies for environmental cleanup. Furthermore, this species is part of a larger group of Gordonia bacteria that are known for their resilience in harsh environments, including those with high levels of pollutants. This adaptability highlights the potential of G. rubripertincta in biotechnological applications, particularly in the field of environmental microbiology. In summary, Gordonia rubripertincta stands out due to its bioremediation potential, unique pigment production, and ability to degrade complex pollutants, making it a significant organism for both ecological studies and practical applications in environmental science.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Mycobacteriales

Family: Gordoniaceae

Genus: Gordonia

Species: Gordonia rubripertincta

NCBI ID

36822

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/070/455/GCA_014070455.1_ASM1407045v1

File for sequence-based predictions:
GCA_014070455.1_ASM1407045v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia rubripertincta is a member of the genus Gordonia, which is known for its environmental resilience and ability to degrade various organic compounds. While Gordonia rubripertincta is primarily recognized for its role in bioremediation, it has also been associated with human health implications. Clinical relevance arises from its potential to cause infections, particularly in immunocompromised individuals. Cases of cutaneous infections and pulmonary infections have been documented, highlighting its pathogenicity in vulnerable populations. One of the significant concerns regarding Gordonia rubripertincta is its antimicrobial resistance. This organism has shown resistance to multiple classes of antibiotics, complicating treatment options for infections it may cause. The mechanisms of resistance are not fully understood but may involve the production of beta-lactamases and other efflux pumps that expel antibiotics from the bacterial cell. In terms of immune evasion, Gordonia rubripertincta may employ strategies such as biofilm formation, which protects it from both the host immune response and antimicrobial agents. This ability to form biofilms can lead to chronic infections that are difficult to treat. While there is limited information on the use of Gordonia rubripertincta in medical applications, its relatives in the Gordonia genus are being explored for potential use in probiotics and therapeutics due to their metabolic capabilities. However, more research is needed to fully understand the implications of Gordonia rubripertincta in clinical settings and its potential benefits or risks in human health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Gordonia rubripertincta is a species of actinobacteria that is primarily associated with soil environments and wastewater treatment systems. This microorganism thrives in nutrient-rich habitats, often found in areas where organic matter is abundant, such as decaying plant material and compost. Its ability to degrade complex organic compounds makes it a vital player in the biodegradation process, contributing to nutrient cycling within these ecosystems. In wastewater treatment plants, Gordonia rubripertincta plays a significant role in the breakdown of pollutants, particularly in the degradation of xenobiotic compounds and hydrophobic substances. This capability not only aids in the purification of water but also helps in the reduction of environmental contaminants, showcasing its importance in bioremediation efforts. Additionally, this microorganism exhibits notable interactions with its surroundings, including potential symbiotic relationships with other microbial communities. By forming biofilms, Gordonia rubripertincta can enhance the stability and efficiency of microbial consortia, which are essential for maintaining the health of soil ecosystems and aquatic environments. Overall, Gordonia rubripertincta is well-adapted to thrive in dynamic environments where it contributes to ecological balance through its metabolic activities and interactions with other organisms.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia rubripertincta has shown significant potential in various industrial applications, particularly in the fields of biotechnology, waste management, and bioremediation. This actinobacterium is known for its ability to degrade complex organic compounds, making it a valuable asset in waste treatment processes. Its enzymatic activity allows it to break down pollutants such as hydrocarbons, which is crucial for the cleanup of contaminated environments. In the realm of biotechnology, Gordonia rubripertincta is utilized in the production of specific enzymes that can be harnessed for various industrial processes. These enzymes can facilitate fermentation processes, enhancing the efficiency of biofuel production by converting biomass into fermentable sugars. This capability positions the organism as a potential candidate for sustainable biofuel development, particularly in the conversion of lignocellulosic materials. Moreover, the organism's unique metabolic pathways enable it to thrive in harsh conditions, which can be advantageous in bioremediation efforts where other microorganisms may fail. Its application in the degradation of synthetic compounds, such as plastics and other persistent pollutants, highlights its role in environmental sustainability initiatives. Overall, Gordonia rubripertincta exemplifies the intersection of microbial activity and industrial innovation, showcasing its importance in pharmaceutical development, waste management, and biofuel production through its diverse metabolic capabilities and enzymatic functions.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemini-flash-1.5	google/palm-2-chat-bison-32k	anthropic/claude-3.5-sonnet	google/gemini-pro	perplexity/llama-3-sonar-small-32k-chat	anthropic/claude-3-haiku:beta	meta-llama/llama-3-8b-instruct:nitro	google/gemma-7b-it	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	openchat/openchat-7b	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro
Motility	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗	N/A	gram stain variable ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Animal pathogenicity	TRUE	false ✗	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	true	true	false	false	true	true	true	true	false	false	true	true	true	true	true	true	false	false	false	false	true	true
Host association	FALSE	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓

Back to Search