Paraphotobacterium marinum

General Information

Paraphotobacterium marinum is a fascinating microorganism that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This bacterium was first isolated from marine environments, which suggests it has adapted to thrive in saline conditions. One of the most intriguing aspects of P. marinum is its ability to produce bioluminescence, a trait that is relatively rare among bacteria. This bioluminescence is not only a captivating natural phenomenon but also holds significant promise for various scientific applications, including environmental monitoring and the development of biosensors. Another noteworthy characteristic of Paraphotobacterium marinum is its metabolic versatility. It can utilize a wide range of organic compounds, making it a potential candidate for bioremediation efforts, particularly in marine ecosystems contaminated with organic pollutants. The bacterium's ability to degrade complex organic molecules could be harnessed to clean up oil spills and other environmental contaminants. From a research perspective, P. marinum is also valuable due to its relatively simple genome, which makes it an excellent model organism for studying gene regulation and metabolic pathways in marine bacteria. The insights gained from studying this organism could lead to advancements in synthetic biology, where engineered bacteria are designed to perform specific tasks, such as producing biofuels or synthesizing valuable biochemicals. In summary, Paraphotobacterium marinum stands out due to its bioluminescent properties, metabolic versatility, and potential applications in bioremediation and synthetic biology. Its unique adaptations to the marine environment make it a subject of considerable interest in both basic and applied microbiological research.

Paraphotobacterium marinum is a fascinating marine bacterium that has garnered attention due to its unique metabolic capabilities and ecological significance. This organism is notable for its ability to utilize a variety of organic compounds, which allows it to thrive in diverse marine environments. Its metabolic versatility is particularly interesting as it can contribute to nutrient cycling in oceanic ecosystems, playing a crucial role in the degradation of organic matter and the recycling of nutrients essential for marine life. One of the most remarkable features of Paraphotobacterium marinum is its potential for biotechnological applications. Researchers are exploring its enzymatic pathways for the production of biofuels and bioplastics, which could provide sustainable alternatives to fossil fuels and conventional plastics. The enzymes produced by this bacterium may also have applications in bioremediation, helping to break down pollutants in marine environments. Furthermore, Paraphotobacterium marinum has been studied for its interactions with other marine microorganisms, contributing to our understanding of microbial communities and their dynamics in ocean ecosystems. This organism's ability to adapt to varying environmental conditions makes it a valuable model for studying microbial resilience and adaptation in the face of climate change. In summary, Paraphotobacterium marinum stands out not only for its ecological roles but also for its potential contributions to biotechnology and environmental science, making it a subject of ongoing research interest.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Vibrionales

Family: Vibrionaceae

Genus: Paraphotobacterium

Species: Paraphotobacterium marinum

NCBI ID

1755811

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/216/855/GCF_002216855.1_ASM221685v1

File for sequence-based predictions:
GCF_002216855.1_ASM221685v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Paraphotobacterium marinum is a gram-negative, anaerobic bacterium that has been isolated from marine environments and is of growing interest in clinical microbiology. While its direct role in human health is not extensively documented, it is associated with certain clinical implications, particularly in the context of infections related to marine exposure. Infections caused by P. marinum can occur in individuals who have open wounds or cuts that come into contact with contaminated water, leading to conditions such as wound infections or soft tissue infections. These infections can be particularly severe in immunocompromised patients, highlighting the organism's potential pathogenicity. Furthermore, P. marinum has been studied for its ability to evade the immune response, which may involve mechanisms such as biofilm formation and the production of virulence factors that enhance its survival in hostile environments. The organism's antimicrobial resistance profile is not well characterized, but like many marine bacteria, it may possess resistance mechanisms that complicate treatment options. In terms of medical applications, while P. marinum is not currently recognized as a probiotic or therapeutic agent, its study contributes to the understanding of marine microbiomes and their interactions with human health. Continued research into this organism may reveal further insights into its clinical relevance, particularly in the context of marine-related infections and the broader implications of marine bacteria in human health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Paraphotobacterium marinum is a marine bacterium commonly found in coastal waters and marine sediments. This microorganism thrives in environments characterized by high salinity and varying temperatures, often associated with brackish water ecosystems. Its presence is particularly noted in areas with abundant organic matter, where it plays a crucial role in the decomposition of organic materials, contributing to nutrient cycling within the ecosystem. In terms of ecological niches, Paraphotobacterium marinum is often found in association with phytoplankton and zooplankton, where it may engage in symbiotic relationships that enhance nutrient availability for both the bacterium and its hosts. This interaction is vital for maintaining the health of marine food webs, as it helps in the breakdown of complex organic compounds into simpler forms that can be utilized by other organisms. Additionally, Paraphotobacterium marinum exhibits remarkable environmental adaptation capabilities, allowing it to survive in fluctuating conditions typical of intertidal zones and estuarine environments. Its metabolic versatility enables it to utilize various substrates, making it a key player in the microbial community dynamics of these habitats. Overall, this bacterium is integral to the functioning of marine ecosystems, influencing both biogeochemical cycles and the overall health of marine biodiversity.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Paraphotobacterium marinum has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Paraphotobacterium marinum is utilized in fermentation processes to produce valuable metabolites. This organism is known for its ability to ferment a range of substrates, making it a candidate for the production of bioactive compounds, including organic acids and alcohols, which can be harnessed in food and beverage industries. In the realm of waste management, Paraphotobacterium marinum has demonstrated capabilities in biodegradation of pollutants, particularly in marine environments. Its enzymatic activity allows it to break down complex organic materials, contributing to the detoxification of contaminated water bodies and aiding in the restoration of ecological balance. Furthermore, this microorganism is being explored for its role in biofuel production. Through fermentation, it can convert biomass into biofuels, such as ethanol, providing a sustainable alternative to fossil fuels. The efficiency of Paraphotobacterium marinum in utilizing various feedstocks enhances its attractiveness for large-scale biofuel production. In pharmaceutical development, the unique metabolic pathways of Paraphotobacterium marinum are being investigated for the synthesis of novel compounds with potential therapeutic properties. Its ability to produce specific enzymes can be leveraged in the development of pharmaceuticals, particularly in the synthesis of complex organic molecules. Overall, Paraphotobacterium marinum presents a versatile platform for various industrial applications, particularly in biotechnology, waste management, biofuel production, and pharmaceutical development, showcasing its importance in advancing sustainable practices and innovative solutions in these fields.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	anthropic/claude-3-haiku:beta	meta-llama/llama-3-8b-instruct:nitro	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	google/palm-2-chat-bison-32k	anthropic/claude-3.5-sonnet	google/gemma-7b-it	meta-llama/llama-3-70b-instruct:nitro	google/gemini-pro	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	openchat/openchat-7b	openchat/openchat-7b	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b
Motility	FALSE	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	aerotolerant ✗	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	false	false	true	true
Animal pathogenicity	N/A	true	false	true	false	false	false	true	true	true	true	false	false	true	true	false	false	false	false	false	false	true	true	true	true	false	false	true	true
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	true	true	true	false	true	true	true	true	false	false	true	true	true	true	true	true	false	false	false	false	true	true	false	false	true	true
Host association	N/A	true	false	true	true	false	false	false	true	true	true	false	false	true	true	true	true	false	false	false	false	true	true	true	true	false	false	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	alpha	N/A	gamma	N/A	N/A	N/A	N/A	N/A	gamma	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓

Back to Search