Pseudomonas wadenswilerensis

General Information

Pseudomonas wadenswilerensis is a fascinating bacterium that belongs to the genus Pseudomonas, which is known for its metabolic diversity and environmental versatility. This species was first isolated from a bioreactor used for the treatment of wastewater, highlighting its potential role in bioremediation. One of the most intriguing aspects of Pseudomonas wadenswilerensis is its ability to degrade complex organic compounds, making it a valuable candidate for environmental cleanup efforts. Additionally, Pseudomonas wadenswilerensis exhibits a unique genetic makeup that allows it to thrive in various environmental conditions, including those with high levels of pollutants. This adaptability is partly due to its extensive repertoire of enzymes capable of breaking down a wide range of substrates. From a research perspective, Pseudomonas wadenswilerensis is particularly interesting because it can serve as a model organism for studying microbial ecology and the mechanisms of biodegradation. Its genome has been sequenced, providing insights into the genetic basis of its metabolic capabilities and environmental resilience. Moreover, the bacterium's ability to form symbiotic relationships with plants can be leveraged in agricultural biotechnology to promote plant growth and health, especially in contaminated soils. This makes Pseudomonas wadenswilerensis not only a subject of academic interest but also a potential tool for sustainable agriculture and environmental management. In summary, Pseudomonas wadenswilerensis stands out due to its bioremediation potential, metabolic versatility, and genetic adaptability, making it a valuable organism for both scientific research and practical applications in environmental and agricultural fields.

Pseudomonas wadenswilerensis is a fascinating bacterium that was first isolated from a soil sample in Wädenswil, Switzerland. This species is part of the diverse genus Pseudomonas, known for its metabolic versatility and ability to thrive in various environments. One of the most interesting aspects of P. wadenswilerensis is its potential for bioremediation, as it has shown the ability to degrade a range of environmental pollutants, including hydrocarbons and other organic compounds. This characteristic makes it a valuable organism for research in environmental microbiology and biotechnology, particularly in efforts to clean up contaminated sites. Additionally, P. wadenswilerensis exhibits unique enzymatic capabilities that allow it to utilize various carbon sources, which can be harnessed for industrial applications. Its adaptability to different ecological niches highlights the evolutionary success of the Pseudomonas genus, making it a subject of interest for studies on microbial ecology and evolution. Furthermore, the genomic analysis of P. wadenswilerensis has revealed insights into its metabolic pathways and regulatory mechanisms, providing a deeper understanding of how this organism interacts with its environment. This knowledge can contribute to the development of novel biotechnological applications, such as biofertilizers or biocontrol agents in agriculture. In summary, Pseudomonas wadenswilerensis stands out due to its bioremediation potential, metabolic versatility, and genomic insights, making it a significant organism for both environmental and industrial research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas wadenswilerensis

NCBI ID

1785161

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/749/185/GCF_024749185.1_ASM2474918v1

File for sequence-based predictions:
GCF_024749185.1_ASM2474918v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas wadenswilerensis is a member of the Pseudomonas genus, which is known for its environmental versatility and potential pathogenicity. While specific clinical data on P. wadenswilerensis is limited, its close relatives, particularly Pseudomonas aeruginosa, provide insight into potential clinical implications. This genus is often associated with opportunistic infections, particularly in immunocompromised patients, such as those with cystic fibrosis, burns, or undergoing chemotherapy. Pathogenicity is attributed to its ability to form biofilms, produce a variety of virulence factors, and exhibit immune evasion strategies that allow it to persist in hostile environments, including the human body. Antimicrobial resistance is a significant concern with Pseudomonas species, as they are known to harbor multiple resistance mechanisms, including the production of beta-lactamases and efflux pumps. This resistance complicates treatment options and poses a challenge in clinical settings, particularly in nosocomial infections. In terms of human health, while P. wadenswilerensis itself may not be directly linked to specific diseases, its relatives are known to cause a range of infections, including pneumonia, urinary tract infections, and sepsis. The organism's environmental presence suggests it could be involved in outbreaks, particularly in healthcare settings where it can contaminate medical equipment or surfaces. Overall, while P. wadenswilerensis may not have extensive documented clinical relevance, its association with the Pseudomonas genus highlights the importance of monitoring for potential pathogenicity and resistance in clinical microbiology.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas wadenswilerensis is a bacterium commonly associated with various freshwater ecosystems and soil environments. This microorganism thrives in nutrient-rich habitats, often found in wetlands and riverbanks, where it plays a crucial role in nutrient cycling and organic matter decomposition. Its ability to degrade a wide range of organic compounds makes it an important player in the biogeochemical cycles of these ecosystems. In aquatic environments, Pseudomonas wadenswilerensis contributes to the breakdown of pollutants, thus aiding in bioremediation efforts. This bacterium can interact with other microorganisms, forming complex microbial communities that enhance the overall health of the ecosystem. Its presence is often indicative of a balanced and functioning environment, as it helps maintain the water quality by reducing harmful substances. In soil habitats, this organism is known for its role in promoting plant health through symbiotic relationships. It can enhance nutrient availability for plants, particularly in nutrient-poor soils, by solubilizing essential minerals. This interaction not only benefits the plants but also supports the overall biodiversity of the soil microbiome. Overall, Pseudomonas wadenswilerensis exemplifies the intricate connections within ecosystems, showcasing its adaptability and essential functions in maintaining ecological balance.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas wadenswilerensis has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where this organism is utilized for its ability to perform biodegradation of environmental pollutants. Its metabolic versatility allows it to break down complex organic compounds, making it valuable in waste management processes aimed at treating contaminated soils and water. In the realm of biofuel production, Pseudomonas wadenswilerensis can be involved in the fermentation of biomass, converting organic materials into bioethanol or biogas. This process not only helps in waste reduction but also contributes to sustainable energy solutions. Furthermore, the organism has potential applications in pharmaceutical development due to its ability to produce various enzymes that can be harnessed for drug synthesis or as biocatalysts in chemical reactions. The enzymatic activity of Pseudomonas wadenswilerensis can facilitate the production of chiral compounds, which are essential in the manufacture of many pharmaceuticals. Overall, the diverse capabilities of Pseudomonas wadenswilerensis in fermentation, biodegradation, and enzyme production highlight its importance in advancing industrial processes and promoting environmental sustainability.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3-haiku:beta	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	mistralai/mistral-7b-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	google/gemma-7b-it	google/gemma-7b-it	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	false ✗	true ✓	false ✗	false ✗	true ✓	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	false	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	N/A	false	true	true	true	true	true	true	true	false	false	false	false	false	false	true	true	true	true	false	false	false	false	true	true	true	true	true	true
Plant pathogenicity	FALSE	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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