Gordonia oryzae

General Information

Gordonia oryzae is a fascinating microorganism belonging to the genus Gordonia, which is known for its diverse metabolic capabilities and environmental resilience. One of the most intriguing aspects of Gordonia oryzae is its ability to degrade a wide range of complex organic compounds, making it a valuable candidate for bioremediation efforts. This species has been isolated from various environments, including soil and water, where it plays a crucial role in breaking down pollutants and contributing to the natural recycling of organic matter. Gordonia oryzae is particularly notable for its potential applications in the degradation of hydrocarbons and other persistent environmental contaminants. Its enzymatic machinery is capable of transforming toxic substances into less harmful compounds, which can significantly aid in the cleanup of contaminated sites. Additionally, the organism's adaptability to different environmental conditions enhances its utility in diverse bioremediation scenarios. From a research perspective, Gordonia oryzae offers valuable insights into the mechanisms of microbial degradation and the genetic basis of its metabolic pathways. Studying this organism can lead to the discovery of novel enzymes and metabolic processes that could be harnessed for industrial applications, such as the production of biofuels and the synthesis of valuable biochemicals. Furthermore, understanding the interactions of Gordonia oryzae with other microorganisms in its native habitats can provide broader ecological insights and inform strategies for managing microbial communities in natural and engineered environments. In summary, Gordonia oryzae is a microorganism of significant interest due to its robust metabolic capabilities, environmental resilience, and potential applications in bioremediation and industrial biotechnology. Its study not only advances our knowledge of microbial ecology and metabolism but also opens up new avenues for environmental and industrial innovation.

Gordonia oryzae is a fascinating actinobacterial species that has garnered attention due to its unique metabolic capabilities and ecological significance. This microorganism is particularly interesting because it is known for its ability to degrade a variety of complex organic compounds, including those found in agricultural waste. This characteristic positions G. oryzae as a potential candidate for bioremediation applications, where it could be utilized to clean up contaminated environments, especially those affected by agricultural runoff. One of the standout features of G. oryzae is its capacity to metabolize aromatic compounds, which are often resistant to degradation. This ability not only highlights the organism's versatility but also its potential role in the bioconversion of waste materials into valuable products. Researchers are particularly interested in the enzymatic pathways employed by G. oryzae for the breakdown of these compounds, as understanding these mechanisms could lead to advancements in biotechnology and environmental science. Additionally, G. oryzae has been isolated from various ecological niches, including soil and plant rhizospheres, indicating its adaptability and potential symbiotic relationships with plants. This aspect opens avenues for exploring its role in promoting plant health and growth, making it a valuable organism in agricultural research. In summary, the unique metabolic capabilities of Gordonia oryzae, particularly its ability to degrade complex organic pollutants, along with its ecological versatility, make it a significant subject of study in both environmental and agricultural sciences. Its potential applications in bioremediation and plant health enhancement underscore its value in ongoing research efforts.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Mycobacteriales

Family: Gordoniaceae

Genus: Gordonia

Species: Gordonia oryzae

NCBI ID

2487349

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/797/185/GCF_003797185.1_ASM379718v1

File for sequence-based predictions:
GCF_003797185.1_ASM379718v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia oryzae is a member of the genus Gordonia, which is known for its environmental resilience and ability to degrade various organic compounds. While Gordonia oryzae is primarily recognized for its role in bioremediation, it has also been associated with human health implications. Clinical relevance arises from its potential to cause infections, particularly in immunocompromised individuals. Cases of cutaneous infections and pulmonary infections have been documented, highlighting its pathogenicity in vulnerable populations. One of the notable aspects of Gordonia oryzae is its antimicrobial resistance. It has shown resistance to multiple antibiotics, which complicates treatment options for infections. This resistance is often attributed to the presence of efflux pumps and the ability to form biofilms, which enhance its survival in hostile environments, including within the human body. In terms of immune evasion, Gordonia oryzae can manipulate host immune responses, making it challenging for the immune system to effectively target and eliminate the pathogen. This characteristic is particularly concerning in clinical settings where patients may already be immunocompromised. While there are no widely recognized medical applications of Gordonia oryzae in terms of probiotics or vaccines, its role in biodegradation processes suggests potential future applications in environmental health. However, further research is needed to fully understand its implications in human health and disease.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Gordonia oryzae is a species of actinobacteria that is primarily associated with soil environments and plant rhizospheres. This microorganism thrives in nutrient-rich soils, particularly those influenced by organic matter decomposition. Its presence is often linked to areas with high levels of plant biomass, where it plays a crucial role in the breakdown of complex organic compounds, contributing to nutrient cycling within the ecosystem. In the rhizosphere, Gordonia oryzae interacts symbiotically with plant roots, enhancing nutrient availability and promoting plant health. This relationship is particularly significant in agricultural settings, where it can help improve soil fertility and plant growth. The bacterium is known for its ability to degrade various pollutants, including aromatic compounds, which makes it an important player in bioremediation efforts in contaminated soils. Furthermore, Gordonia oryzae exhibits remarkable environmental adaptability, allowing it to thrive in diverse conditions, including those with varying pH levels and moisture content. Its metabolic versatility enables it to utilize a wide range of substrates, making it a resilient organism in fluctuating environments. Overall, Gordonia oryzae contributes significantly to the health of terrestrial ecosystems through its roles in nutrient cycling, plant interactions, and environmental remediation.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia oryzae has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where Gordonia oryzae is utilized for its ability to degrade complex organic compounds, making it valuable in waste management processes. This organism can effectively break down pollutants, including aromatic compounds, which are often found in industrial waste, thus contributing to environmental remediation efforts. In the realm of biofuel production, Gordonia oryzae has been studied for its capacity to metabolize fatty acids and other lipids, which can be converted into biodiesel. The organism's unique metabolic pathways allow it to utilize various substrates, making it a candidate for fermentation processes aimed at producing renewable energy sources. Furthermore, Gordonia oryzae has demonstrated potential in pharmaceutical development due to its ability to produce specific enzymes that can be harnessed for drug synthesis. The enzymatic activity of this microorganism can facilitate the production of bioactive compounds, which are essential in the pharmaceutical industry. Overall, the versatility of Gordonia oryzae in biodegradation, enzyme production, and waste treatment highlights its importance in advancing sustainable industrial practices and developing innovative solutions across multiple sectors.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	mistralai/mistral-7b-instruct	google/palm-2-chat-bison-32k	google/gemma-7b-it	mistralai/mixtral-8x7b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	anthropic/claude-3-haiku:beta	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	google/gemini-pro	google/gemini-pro	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain variable ✗	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerotolerant ✗	aerobic ✓	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerotolerant ✗	aerotolerant ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	true	true	false	false	false	false	true	true	true	true	true	true	true	true	true	true	true	true	false	false	false	false
Host association	FALSE	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	coccus ✗	coccus ✗

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