Paraburkholderia terricola

General Information

Paraburkholderia terricola is a fascinating microorganism that belongs to the genus Paraburkholderia. This genus is known for its diverse metabolic capabilities and environmental versatility. One of the most intriguing aspects of P. terricola is its ability to degrade a wide range of organic compounds, making it a valuable organism for bioremediation efforts. This species can break down pollutants such as polycyclic aromatic hydrocarbons (PAHs), which are common environmental contaminants. Another notable feature of P. terricola is its plant growth-promoting properties. It can form beneficial associations with plants, enhancing their growth by producing phytohormones, solubilizing phosphate, and fixing nitrogen. This makes P. terricola an important candidate for sustainable agriculture practices, as it can help reduce the need for chemical fertilizers. From a research perspective, P. terricola is also interesting due to its genomic plasticity. The genome of this species contains a variety of genes that allow it to adapt to different environmental conditions, including genes for antibiotic resistance and heavy metal tolerance. This adaptability makes it a model organism for studying microbial evolution and environmental adaptation. In summary, Paraburkholderia terricola is a versatile and valuable microorganism with significant potential in bioremediation, sustainable agriculture, and microbial ecology research. Its ability to degrade pollutants, promote plant growth, and adapt to various environments underscores its importance in both applied and fundamental scientific studies.

Paraburkholderia terricola is a fascinating bacterium that belongs to the Burkholderiaceae family. This organism is particularly notable for its versatile metabolic capabilities, which allow it to thrive in a variety of environments, including soil and plant rhizospheres. One of the most interesting aspects of P. terricola is its ability to degrade a wide range of organic compounds, making it a valuable player in bioremediation efforts. This characteristic positions it as a potential candidate for the cleanup of contaminated environments, particularly those affected by pollutants such as hydrocarbons and pesticides. Additionally, P. terricola has been studied for its plant growth-promoting properties. It can establish beneficial relationships with various plants, enhancing their growth and resilience against pathogens. This symbiotic interaction is of great interest in agricultural research, as it could lead to sustainable practices that reduce the need for chemical fertilizers and pesticides. Furthermore, the genomic analysis of P. terricola reveals a rich repertoire of genes associated with secondary metabolite production, which may have implications for the discovery of novel antibiotics or other bioactive compounds. This potential for biotechnological applications underscores the importance of P. terricola in both environmental and pharmaceutical research. In summary, Paraburkholderia terricola stands out due to its metabolic versatility, plant growth promotion, and potential for biotechnological applications, making it a significant organism for further study in microbiology and environmental science.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Paraburkholderia

Species: Paraburkholderia terricola

NCBI ID

169427

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/330/825/GCF_003330825.1_ASM333082v1

File for sequence-based predictions:
GCF_003330825.1_ASM333082v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Paraburkholderia terricola is a member of the Burkholderia genus, which is known for its diverse ecological roles and potential clinical implications. While P. terricola is primarily recognized for its environmental presence, particularly in soil, its relevance in human health is emerging. Clinical associations with P. terricola are not as well-documented as those of other Burkholderia species, but it has been isolated from clinical specimens, suggesting a potential role in infections in immunocompromised individuals. The organism may exhibit pathogenicity under certain conditions, particularly in patients with underlying health issues, although specific disease associations remain to be fully elucidated. One of the notable aspects of P. terricola is its potential for antimicrobial resistance, which is a common feature among Burkholderia species. This resistance can complicate treatment options for infections, making it crucial for healthcare providers to be aware of its presence in clinical settings. The organism's ability to survive in various environments may also contribute to its immune evasion strategies, allowing it to persist in the human body and evade detection by the immune system. In terms of medical applications, while P. terricola is not widely recognized for therapeutic use, its relatives in the Burkholderia genus have been explored for their potential in bioremediation and as probiotics. However, further research is needed to clarify the specific roles and applications of P. terricola in human health and disease. Overall, the clinical implications of Paraburkholderia terricola warrant further investigation to better understand its impact on human health and its potential as a pathogen.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Paraburkholderia terricola is primarily associated with soil ecosystems, where it plays a crucial role in nutrient cycling and organic matter decomposition. This microorganism thrives in a variety of terrestrial habitats, particularly in areas rich in organic material, such as decaying plant matter and root zones of various plants. Its ability to degrade complex organic compounds makes it an essential player in the soil microbiome, contributing to soil health and fertility. In these soil environments, P. terricola often engages in symbiotic relationships with plant roots, enhancing nutrient uptake, particularly nitrogen, through its nitrogen-fixing capabilities. This interaction not only benefits the plants but also promotes a diverse microbial community, fostering a balanced ecosystem. Additionally, P. terricola is known to exhibit environmental adaptability, allowing it to thrive in varying soil pH levels and moisture conditions. Its presence is often indicative of healthy soil ecosystems, as it helps in the breakdown of pollutants and contributes to the overall resilience of the soil biome against environmental stressors. Overall, Paraburkholderia terricola is a vital microorganism within its ecological niche, supporting both plant life and soil health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Paraburkholderia terricola has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where P. terricola is utilized for its ability to perform biodegradation of environmental pollutants. This capability makes it a valuable asset in waste management, particularly in the treatment of contaminated soils and water, where it can break down harmful compounds, thus aiding in the restoration of ecosystems. In the realm of biofuel production, P. terricola has been studied for its role in fermentation processes that convert organic materials into bioethanol. Its metabolic pathways allow for the efficient conversion of various substrates, making it a candidate for sustainable energy solutions. Furthermore, P. terricola has potential applications in pharmaceutical development due to its ability to produce bioactive compounds. These compounds can be harnessed for their medicinal properties, contributing to the development of new drugs or therapeutic agents. Overall, the versatility of Paraburkholderia terricola in these industrial sectors highlights its importance as a microorganism that can contribute to environmental sustainability and innovation in biotechnology.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	google/gemini-flash-1.5	openai/gpt-3.5-turbo-0125	google/gemini-pro	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	perplexity/llama-3-sonar-small-32k-chat	mistralai/mistral-7b-instruct	google/gemini-pro-1.5	google/gemini-pro-1.5	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	openai/gpt-4	openai/gpt-4	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	google/gemma-7b-it	google/gemma-7b-it	openai/gpt-4o	openai/gpt-4o
Motility	N/A	true	true	true	true	true	true	false	true	false	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerotolerant ✗	aerotolerant ✗	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	true	false	true	true	true	false	true	true	true	true	false	false	true	true	true	true	false	false	true	true	true	true	false	false	true	true
Host association	N/A	false	true	false	false	false	false	false	true	true	false	false	false	false	false	false	true	true	false	false	false	false	false	false	false	false	false	false
Plant pathogenicity	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	gamma ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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