Myroides oncorhynchi

General Information

Myroides oncorhynchi is a fascinating microorganism that belongs to the genus Myroides. This bacterium is particularly interesting due to its unique pigmentation and enzymatic capabilities. One of the most notable features of M. oncorhynchi is its production of a distinctive yellow pigment, which can be a useful marker in microbiological studies and environmental monitoring. Another remarkable characteristic of Myroides oncorhynchi is its ability to degrade complex organic compounds. This makes it a valuable organism in bioremediation efforts, particularly in the breakdown of pollutants in aquatic environments. The species was originally isolated from the skin of rainbow trout (Oncorhynchus mykiss), indicating its potential role in the natural microbiota of fish and its possible applications in aquaculture. From a research perspective, M. oncorhynchi is also notable for its antibiotic resistance. It exhibits resistance to a wide range of antibiotics, which poses challenges for treatment but also provides a model for studying mechanisms of resistance and developing new antimicrobial strategies. In summary, Myroides oncorhynchi stands out due to its distinctive pigmentation, biodegradation capabilities, and antibiotic resistance, making it a subject of interest in environmental science, microbiology, and medical research.

Myroides oncorhynchi is a fascinating bacterium primarily known for its association with fish, particularly in aquaculture settings. This organism is notable for its ability to thrive in aquatic environments, making it a subject of interest in studies related to fish health and disease management. One of the most intriguing aspects of M. oncorhynchi is its role as an opportunistic pathogen, which can lead to infections in fish, particularly under stress conditions or when the host's immune system is compromised. This characteristic makes it a valuable model for understanding host-pathogen interactions in aquatic species. Furthermore, M. oncorhynchi has been studied for its unique metabolic capabilities, including the degradation of various organic compounds, which can have implications for bioremediation efforts in aquatic ecosystems. Its ability to adapt to different environmental conditions also raises questions about its ecological role and potential applications in biotechnology. In addition, research on M. oncorhynchi contributes to the broader understanding of the genus Myroides, which is known for its diverse metabolic pathways and potential utility in industrial processes. The insights gained from studying this bacterium can inform strategies for managing fish diseases and improving aquaculture practices, highlighting its significance in both environmental and economic contexts.

Taxonomy

Superkingdom: Bacteria

Phylum: Bacteroidota

Class: Flavobacteriia

Order: Flavobacteriales

Family: Flavobacteriaceae

Genus: Myroides

Species: Myroides oncorhynchi

NCBI ID

2893756

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/905/415/GCA_020905415.1_ASM2090541v1

File for sequence-based predictions:
GCA_020905415.1_ASM2090541v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Myroides oncorhynchi is a Gram-negative bacterium primarily associated with fish, particularly salmonids, but it has been documented in human clinical cases. Clinical implications of Myroides oncorhynchi include its role as an opportunistic pathogen, particularly in immunocompromised individuals. It has been linked to infections such as skin and soft tissue infections, respiratory tract infections, and bacteremia. The organism exhibits notable antimicrobial resistance, particularly to commonly used antibiotics, which complicates treatment options. This resistance is attributed to its intrinsic mechanisms, including the production of beta-lactamases and efflux pumps, which contribute to its ability to evade antimicrobial therapies. Furthermore, Myroides oncorhynchi has been isolated from various environmental sources, indicating its potential as a contaminant in clinical settings. Its interaction with the human body can provoke an immune response, but its ability to evade this response through biofilm formation and other strategies poses challenges for effective management of infections. While there are no established medical applications such as probiotics or vaccines specifically for Myroides oncorhynchi, understanding its pathogenicity and resistance mechanisms is crucial for developing effective therapeutic strategies against infections caused by this organism.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Myroides oncorhynchi is a bacterium commonly associated with aquatic environments, particularly in freshwater ecosystems. This organism is often found in lakes, rivers, and ponds, where it thrives in nutrient-rich waters. Its presence is frequently linked to the decomposition of organic matter, playing a crucial role in nutrient cycling within these habitats. Freshwater Biomes: In freshwater biomes, Myroides oncorhynchi can be found in sediment and water columns, where it contributes to the breakdown of complex organic compounds. This bacterium is known for its ability to degrade various pollutants, making it an important player in bioremediation efforts. Its metabolic versatility allows it to adapt to varying nutrient levels and environmental conditions, which is essential for survival in dynamic aquatic ecosystems. Symbiotic Relationships: Myroides oncorhynchi may also engage in symbiotic relationships with other microorganisms, enhancing the overall microbial community's functionality. These interactions can lead to improved nutrient availability for plants and other organisms in the ecosystem, showcasing the bacterium's role in promoting biodiversity. Overall, Myroides oncorhynchi is a significant component of freshwater biomes, contributing to ecological balance and health through its decomposition activities and interactions with other microbial life.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Myroides oncorhynchi has shown potential in various industrial applications, particularly in the fields of biotechnology, waste management, and pharmaceutical development. This organism is known for its ability to thrive in diverse environments, which makes it a candidate for several biotechnological processes. In biotechnology, Myroides oncorhynchi can be utilized in fermentation processes to produce valuable metabolites. Its unique metabolic pathways allow for the conversion of substrates into bioactive compounds, which can be harnessed for nutritional supplements or as precursors in the synthesis of pharmaceuticals. In the realm of waste management, this microorganism has demonstrated capabilities in biodegradation, particularly in the breakdown of complex organic pollutants. Its enzymatic activity can facilitate the degradation of various contaminants, making it useful in the treatment of wastewater and the remediation of polluted environments. Furthermore, Myroides oncorhynchi has been explored for its potential in biofuel production. Through fermentation processes, it can convert biomass into bioethanol or other biofuels, contributing to sustainable energy solutions. In pharmaceutical development, the organism's ability to produce specific enzymes and metabolites can be leveraged for the synthesis of drugs or as biocatalysts in chemical reactions. This highlights its versatility and importance in the development of new therapeutic agents. Overall, Myroides oncorhynchi represents a promising microorganism with diverse applications across multiple industries, particularly in processes such as fermentation, biodegradation, and enzyme production.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	mistralai/mixtral-8x7b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-flash-1.5	google/gemini-flash-1.5	google/gemini-pro	google/gemini-pro	openchat/openchat-7b	openchat/openchat-7b	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat
Motility	N/A	false	true	true	false	true	true	true	true	false	true	true	true	true	false	false	false	false	true	true	true	true	true	true	true	true	true	true
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain variable ✗	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	false	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	coccus ✗	coccus ✗

Back to Search