Paraburkholderia metrosideri

General Information

Paraburkholderia metrosideri is a fascinating bacterium that belongs to the genus Paraburkholderia. This genus is known for its diverse metabolic capabilities and environmental versatility. One of the most intriguing aspects of P. metrosideri is its plant growth-promoting properties. It has been isolated from the rhizosphere of Metrosideros polymorpha, a plant native to Hawaii, indicating a potential symbiotic relationship that benefits plant health and growth. Another notable feature of P. metrosideri is its ability to degrade a wide range of organic compounds, making it a candidate for bioremediation applications. This bacterium can break down pollutants in the environment, contributing to soil and water purification efforts. From a research perspective, P. metrosideri is valuable due to its genomic plasticity. The genome of this bacterium reveals a high degree of adaptability, with numerous genes involved in stress response, nutrient acquisition, and interaction with plant hosts. This genetic flexibility allows P. metrosideri to thrive in various environmental conditions, making it an excellent model organism for studying microbial ecology and evolution. In summary, Paraburkholderia metrosideri stands out for its plant-associated benefits, environmental remediation potential, and genetic adaptability, making it a subject of significant interest in microbial research and biotechnology.

Paraburkholderia metrosideri is a fascinating bacterium primarily known for its unique ecological niche and its role in the nitrogen cycle. This organism is notable for its ability to thrive in iron-rich environments, particularly in the rhizosphere of Metrosideros species, which are native to New Zealand. The association with these plants not only highlights its ecological importance but also its potential applications in agriculture, particularly in enhancing soil fertility and plant growth through nitrogen fixation. One of the most interesting aspects of Paraburkholderia metrosideri is its symbiotic relationship with its host plants. This bacterium forms a mutualistic association that can improve nutrient uptake for the plants, making it a valuable candidate for biofertilizer development. The ability to fix atmospheric nitrogen makes it particularly valuable in sustainable agriculture, where reducing chemical fertilizers is a growing concern. Additionally, Paraburkholderia metrosideri has been studied for its bioremediation potential. Its capacity to degrade various organic pollutants in contaminated environments positions it as a promising agent for environmental cleanup efforts. This characteristic is particularly relevant in the context of increasing environmental pollution and the need for effective bioremediation strategies. Furthermore, research into the genomic and metabolic pathways of Paraburkholderia metrosideri has revealed insights into its adaptability and survival mechanisms in extreme conditions. This adaptability not only makes it a subject of interest in microbial ecology but also in evolutionary biology, as scientists seek to understand how such organisms evolve to thrive in specific niches. In summary, Paraburkholderia metrosideri stands out due to its ecological significance, agricultural applications, and bioremediation capabilities, making it a valuable organism for both research and practical applications in environmental and agricultural sciences.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Paraburkholderia

Species: Paraburkholderia metrosideri

NCBI ID

580937

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/904/848/625/GCA_904848625.1_LMG_28140

File for sequence-based predictions:
GCA_904848625.1_LMG_28140_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Paraburkholderia metrosideri is a member of the Burkholderia genus, which is known for its diverse ecological roles and clinical significance. This microorganism has been associated with various clinical implications, particularly in the context of infections and pathogenicity. It has been identified as a potential pathogen in immunocompromised individuals, leading to opportunistic infections that can affect multiple organ systems. Respiratory infections and wound infections are among the notable disease associations linked to Paraburkholderia metrosideri. One of the critical aspects of this organism is its antimicrobial resistance mechanisms. Paraburkholderia metrosideri exhibits resistance to multiple classes of antibiotics, which complicates treatment options for infections caused by this pathogen. This resistance is often attributed to the presence of efflux pumps and beta-lactamase enzymes, which can degrade or expel antimicrobial agents, making infections difficult to manage. In terms of immune evasion, Paraburkholderia metrosideri has developed strategies to survive within the host, including the ability to modulate the host's immune response. This can lead to chronic infections, particularly in patients with underlying health conditions. While Paraburkholderia metrosideri is primarily recognized for its pathogenic potential, it is also studied for its beneficial applications in bioremediation and plant growth promotion. However, its clinical relevance as a pathogen cannot be overlooked, especially in the context of emerging antibiotic resistance and the need for effective therapeutic strategies.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Paraburkholderia metrosideri has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where P. metrosideri is utilized for its ability to perform biodegradation of environmental pollutants, particularly in contaminated soils and water. This capability makes it a valuable asset in waste management, as it can help in the breakdown of toxic compounds, thus aiding in the remediation of polluted sites. In the realm of biofuel production, P. metrosideri has been studied for its role in the fermentation of biomass, converting organic materials into bioethanol. This process not only contributes to renewable energy sources but also promotes the efficient use of agricultural waste. Furthermore, P. metrosideri is recognized for its pharmaceutical development potential, particularly in the production of bioactive compounds. The organism's enzymatic activity can be harnessed to synthesize various pharmaceuticals, making it a candidate for bioprocessing applications. Overall, the diverse capabilities of Paraburkholderia metrosideri in fermentation, biodegradation, and enzyme production highlight its importance across multiple industries, paving the way for innovative solutions in environmental sustainability and resource management.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	google/gemini-flash-1.5	microsoft/phi-3-mini-128k-instruct	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	google/gemma-7b-it	mistralai/mistral-7b-instruct	google/gemini-pro-1.5	google/gemini-pro-1.5	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	google/gemini-pro	google/gemini-pro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	openai/gpt-4o	openai/gpt-4o
Motility	N/A	true	true	true	false	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain variable ✗	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	false	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	true	false	false	false	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	false	true	true	false	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Host association	N/A	false	true	false	false	true	false	false	false	true	false	false	false	false	true	true	false	false	false	false	false	false	false	false	true	true	false	false
Plant pathogenicity	FALSE	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	alpha ✗	gamma ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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