Streptomyces xantholiticus

General Information

Streptomyces xantholiticus is a fascinating microorganism belonging to the genus Streptomyces, which is renowned for its prolific production of secondary metabolites. One of the most notable characteristics of S. xantholiticus is its ability to produce a wide array of bioactive compounds, including antibiotics, antifungals, and antitumor agents. This makes it an invaluable resource in pharmaceutical research and biotechnology. Streptomyces species are known for their complex life cycle, which includes the formation of a mycelium and spore chains, contributing to their adaptability and survival in various environments. The production of geosmin, a compound responsible for the earthy smell of soil, is another interesting feature of S. xantholiticus. This characteristic not only highlights its ecological role in soil environments but also its potential applications in flavor and fragrance industries. Moreover, S. xantholiticus has been studied for its enzymatic activities, particularly those involved in the degradation of complex organic materials. This makes it a candidate for applications in bioremediation and waste management. The genetic and metabolic versatility of S. xantholiticus continues to be a subject of extensive research, aiming to harness its capabilities for industrial and environmental applications. In summary, Streptomyces xantholiticus stands out due to its diverse secondary metabolite production, ecological significance, and potential for various biotechnological applications, making it a microorganism of great interest in scientific research.

Streptomyces xantholiticus is a fascinating actinobacterium known for its remarkable ability to produce a variety of bioactive compounds, making it a valuable organism in pharmaceutical research. This species is particularly interesting due to its capacity to synthesize antibiotics, which are crucial in the fight against bacterial infections. The metabolites produced by S. xantholiticus have been shown to exhibit significant antimicrobial activity, highlighting its potential as a source for new therapeutic agents. One of the unique aspects of S. xantholiticus is its ecological role in soil environments, where it contributes to the degradation of complex organic materials. This ability not only aids in nutrient cycling but also positions it as a key player in bioremediation efforts, particularly in the breakdown of pollutants. The organism's metabolic versatility allows it to thrive in diverse habitats, showcasing its adaptability and resilience. Furthermore, the genomic analysis of S. xantholiticus has revealed a rich biosynthetic potential, with gene clusters responsible for the production of various secondary metabolites. This genomic insight opens up avenues for genetic engineering and synthetic biology applications, where researchers can manipulate these pathways to enhance the yield of desired compounds or create novel derivatives. In summary, Streptomyces xantholiticus stands out not only for its antibiotic production but also for its ecological significance and potential in biotechnological applications, making it a subject of ongoing research interest in microbiology and pharmacology.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Kitasatosporales

Family: Streptomycetaceae

Genus: Streptomyces

Species: Streptomyces xantholiticus

NCBI ID

68285

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/651/015/GCA_014651015.1_ASM1465101v1

File for sequence-based predictions:
GCA_014651015.1_ASM1465101v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Streptomyces xantholiticus is a member of the genus Streptomyces, which is known for its significant role in the production of antibiotics and other bioactive compounds. While S. xantholiticus itself is not commonly associated with human disease, its relatives have been implicated in various clinical contexts. The primary clinical relevance of S. xantholiticus lies in its potential applications in medicine, particularly in the development of novel antimicrobial agents. This organism is known to produce a variety of secondary metabolites, which can exhibit antimicrobial properties against a range of pathogens. The exploration of these metabolites is crucial in the ongoing battle against antimicrobial resistance, as many traditional antibiotics are becoming less effective due to the emergence of resistant strains. In addition to its potential as a source of new antibiotics, S. xantholiticus may also play a role in probiotic formulations, contributing to gut health and the modulation of the immune response. However, more research is needed to fully understand its interactions with the human microbiome and its implications for human health. Overall, while Streptomyces xantholiticus is not directly linked to specific diseases or infections, its contributions to antibiotic discovery and potential health benefits underscore its importance in the field of microbiology and medicine.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Streptomyces xantholiticus is a species of actinobacteria commonly found in soil environments, particularly in nutrient-rich, organic matter-laden areas. This microorganism thrives in terrestrial biomes where it plays a crucial role in the decomposition of organic materials, contributing to nutrient cycling and soil health. Its ability to produce a variety of bioactive compounds makes it significant in the soil microbiome, where it interacts with other microorganisms and plants, often promoting plant growth through mechanisms such as antibiotic production and nutrient solubilization. In addition to its role in nutrient cycling, Streptomyces xantholiticus is known for its symbiotic relationships with various plants, enhancing their resistance to pathogens and improving overall plant vigor. This interaction exemplifies the importance of microbial diversity in agricultural ecosystems, where such microorganisms can be harnessed for sustainable farming practices. Furthermore, this species is often isolated from decaying plant matter and compost, indicating its preference for environments rich in organic substrates. Its adaptability to varying soil conditions allows it to thrive in both temperate and tropical biomes, making it a versatile organism in the microbial community. Overall, Streptomyces xantholiticus exemplifies the intricate relationships within soil ecosystems, highlighting its essential role in maintaining ecological balance and promoting plant health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Streptomyces xantholiticus has shown significant potential in various industrial applications due to its unique metabolic capabilities. One of the primary areas of interest is in biotechnology, where Streptomyces xantholiticus is known for its ability to produce a range of bioactive compounds, including antibiotics and enzymes. This makes it a valuable organism in the development of new pharmaceuticals, particularly in the production of antimicrobial agents through fermentation processes. In the realm of waste management, Streptomyces xantholiticus has demonstrated effective biodegradation capabilities, particularly in the breakdown of complex organic pollutants. This property can be harnessed in bioremediation efforts to clean up contaminated environments, such as soil and water, by utilizing its natural ability to degrade harmful substances. Furthermore, the organism's enzymatic activity is noteworthy, as it can produce various enzymes that are useful in industrial processes. These enzymes can be applied in biofuel production, where they assist in the conversion of biomass into fermentable sugars, facilitating the production of bioethanol and other renewable energy sources. Overall, Streptomyces xantholiticus represents a promising candidate for multiple industries, including pharmaceutical development, biotechnology, and environmental management, due to its versatile metabolic pathways and ability to produce valuable compounds through fermentation and biodegradation.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	google/gemini-flash-1.5	google/gemma-7b-it	google/gemini-pro	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	N/A	false	false	false	false	false	false	false	true	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	aerotolerant ✗	aerobic ✓	aerobic ✓	aerobic ✓	N/A	aerobic ✓	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	true	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	false	true	false	false	true	false	false	true	true	true	true	true	false	false	false	false	true	true	true	true	true	true	false	false	false	false
Host association	FALSE	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	gamma	gamma	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	tail	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗

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