Paraburkholderia caribensis

General Information

Paraburkholderia caribensis is a fascinating microorganism that belongs to the genus Paraburkholderia. This bacterium is particularly interesting due to its plant growth-promoting properties. It has been isolated from various environments, including soil and plant roots, where it plays a crucial role in enhancing plant health and productivity. One of the most notable features of P. caribensis is its ability to fix atmospheric nitrogen, making it a valuable asset in sustainable agriculture. By converting nitrogen gas into a form that plants can readily absorb, it reduces the need for chemical fertilizers, thereby promoting eco-friendly farming practices. Additionally, Paraburkholderia caribensis is known for its bioremediation potential. It can degrade a variety of environmental pollutants, including aromatic compounds and heavy metals, making it a key player in efforts to clean up contaminated environments. This capability is particularly important in mitigating the impacts of industrial pollution. The bacterium also exhibits antimicrobial activity, producing substances that can inhibit the growth of plant pathogens. This trait further underscores its role in promoting plant health by protecting crops from diseases. In summary, Paraburkholderia caribensis is a microorganism of significant interest due to its multifaceted contributions to agriculture and environmental sustainability. Its abilities to fix nitrogen, degrade pollutants, and protect plants from pathogens make it a valuable subject of study for researchers aiming to develop sustainable solutions for food production and environmental conservation.

Paraburkholderia caribensis is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. Originally isolated from tropical environments, this organism is known for its ability to thrive in diverse habitats, including soil and plant-associated environments. Its adaptability to various ecological conditions makes it a subject of interest for studies on microbial ecology and environmental resilience. One of the most intriguing aspects of P. caribensis is its capacity for biodegradation, particularly in the breakdown of complex organic compounds. This characteristic positions it as a potential candidate for bioremediation efforts, especially in areas contaminated with pollutants. Researchers are exploring its enzymatic pathways to understand how it metabolizes these compounds, which could lead to innovative solutions for environmental cleanup. Additionally, P. caribensis has been studied for its plant growth-promoting properties. It has shown the ability to enhance nutrient availability and stimulate plant growth, making it valuable in agricultural research. The mechanisms behind these interactions are of great interest, as they could lead to the development of sustainable agricultural practices that reduce the need for chemical fertilizers. Furthermore, the genomic analysis of P. caribensis reveals a rich repertoire of genes associated with secondary metabolite production. This suggests that the organism may produce bioactive compounds with potential pharmaceutical applications. The exploration of these metabolites could lead to the discovery of new drugs or therapeutic agents, highlighting the organism's value in the field of natural product chemistry. In summary, Paraburkholderia caribensis stands out due to its ecological versatility, potential for bioremediation, plant growth promotion, and the promise of novel bioactive compounds, making it a significant focus for ongoing research in microbiology and biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Paraburkholderia

Species: Paraburkholderia caribensis

NCBI ID

75105

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/902/945/GCF_002902945.1_ASM290294v1

File for sequence-based predictions:
GCF_002902945.1_ASM290294v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Paraburkholderia caribensis is a member of the Burkholderia genus, which is known for its diverse ecological roles and clinical significance. This bacterium has been associated with various clinical implications, particularly in immunocompromised patients. Infections caused by P. caribensis can lead to serious complications, especially in individuals with underlying health conditions. It has been documented in cases of pulmonary infections, wound infections, and bacteremia, highlighting its potential pathogenicity. One of the notable aspects of P. caribensis is its antimicrobial resistance profile. This organism exhibits resistance to multiple classes of antibiotics, which complicates treatment options and poses a significant challenge in clinical settings. The mechanisms of resistance may involve the production of beta-lactamases and other efflux pumps, which allow it to survive in the presence of antimicrobial agents. In terms of its interaction with the human body, P. caribensis can evade the immune response through various strategies, including the modulation of host cell signaling pathways and the ability to form biofilms. These biofilms can protect the bacteria from both the host immune system and antibiotic treatment, leading to chronic infections. While P. caribensis is primarily recognized for its pathogenic potential, it is also studied for its beneficial applications in bioremediation and as a potential probiotic. However, its clinical relevance remains a concern, particularly in the context of emerging infections and the need for effective therapeutic strategies.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Paraburkholderia caribensis is a versatile bacterium commonly found in various marine environments and coastal ecosystems. This microorganism thrives in brackish waters and is often associated with mangrove forests, where it plays a crucial role in nutrient cycling and organic matter decomposition. Its ability to adapt to varying salinity levels allows it to inhabit both freshwater and saltwater environments, making it a key player in these transitional zones. In mangrove ecosystems, Paraburkholderia caribensis engages in symbiotic relationships with plant roots, aiding in the uptake of nutrients and enhancing plant health. This interaction not only benefits the plants but also contributes to the overall productivity of the ecosystem. The bacterium is known for its capacity to degrade complex organic compounds, thus facilitating the breakdown of detritus and promoting the health of the benthic community. Additionally, Paraburkholderia caribensis has been documented in sediment layers of coastal regions, where it interacts with other microbial communities. Its presence is indicative of a healthy ecosystem, as it helps maintain the balance of microbial populations and supports the food web dynamics. Overall, this microorganism exemplifies the intricate relationships within marine biomes and highlights the importance of microbial diversity in maintaining ecological stability.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Paraburkholderia caribensis has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where P. caribensis is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes are valuable in the production of biofuels, particularly in the breakdown of complex organic materials into simpler sugars that can be fermented into ethanol or other biofuels. In the realm of waste management, P. caribensis has demonstrated capabilities in biodegradation, particularly in the degradation of pollutants such as hydrocarbons. This makes it a candidate for use in bioremediation strategies aimed at cleaning up contaminated environments, such as oil spills or industrial waste sites. Furthermore, the organism has been explored for its role in pharmaceutical development. Its metabolic pathways can be exploited for the production of bioactive compounds, which may lead to the discovery of new drugs or therapeutic agents. The ability of P. caribensis to synthesize various secondary metabolites is particularly noteworthy in this context. Overall, Paraburkholderia caribensis represents a versatile microorganism with applications spanning biotechnology, waste management, and pharmaceutical development, showcasing its importance in sustainable industrial practices.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	google/gemini-flash-1.5	microsoft/wizardlm-2-8x22b	openai/gpt-4o	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	google/gemini-pro-1.5	google/gemini-pro-1.5	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	google/gemma-7b-it	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	google/gemini-pro	google/gemini-pro
Motility	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	true	true
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	true	true	false	true	true	true	true	false	false	true	true	true	true	true	true	true	true	false	false	true	true
Host association	N/A	false	true	false	false	false	false	true	true	false	false	false	true	true	false	false	false	false	false	false	true	true	false	false	true	true	true	true
Plant pathogenicity	FALSE	false ✓	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	gamma ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

Back to Search