Stenotrophomonas geniculata

General Information

Stenotrophomonas geniculata is a fascinating microorganism that belongs to the genus Stenotrophomonas, which is known for its diverse metabolic capabilities and environmental versatility. One of the most intriguing aspects of S. geniculata is its ability to thrive in a variety of ecological niches, including soil, water, and plant surfaces. This adaptability makes it a subject of interest for environmental microbiologists and ecologists. Biotechnological Potential: S. geniculata has shown promise in bioremediation efforts due to its ability to degrade a wide range of pollutants, including hydrocarbons and heavy metals. This makes it a valuable candidate for cleaning up contaminated environments, particularly in industrial and urban areas. Plant Growth Promotion: Another notable characteristic of S. geniculata is its potential role in promoting plant growth. It can produce plant growth-promoting substances such as indole-3-acetic acid (IAA) and siderophores, which can enhance nutrient uptake and stimulate plant growth. This makes it an interesting candidate for agricultural applications, particularly in sustainable farming practices. Antimicrobial Activity: S. geniculata has been observed to produce antimicrobial compounds that can inhibit the growth of various pathogenic microorganisms. This property is of significant interest in the development of new antibiotics and in the study of microbial interactions and competition. Genomic Insights: The genome of S. geniculata reveals a wealth of genetic information that underpins its metabolic versatility and adaptability. Genomic studies have identified genes involved in the degradation of complex organic compounds, resistance to heavy metals, and the synthesis of bioactive compounds. These insights are valuable for understanding the molecular mechanisms that enable its diverse capabilities. In summary, Stenotrophomonas geniculata is a microorganism of considerable interest due to its environmental adaptability, bioremediation potential, plant growth-promoting properties, and antimicrobial activity. Its diverse metabolic capabilities and genetic insights make it a valuable subject for research in environmental science, agriculture, and biotechnology.

Stenotrophomonas geniculata is a fascinating bacterium that belongs to the family Xanthomonadaceae. This organism is particularly notable for its versatile metabolic capabilities, allowing it to thrive in a variety of environments, including soil, water, and even in association with plants. Its ability to degrade a wide range of organic compounds makes it a valuable player in bioremediation efforts, where it can help in the breakdown of pollutants and contribute to environmental cleanup efforts. One of the unique aspects of S. geniculata is its plant growth-promoting properties. It has been shown to enhance plant growth through mechanisms such as nitrogen fixation and the production of phytohormones. This characteristic makes it an interesting candidate for agricultural applications, particularly in sustainable farming practices where reducing chemical fertilizers is a priority. Additionally, S. geniculata has garnered attention in the field of microbial ecology due to its role in the rhizosphere, where it interacts with plant roots and other microorganisms. These interactions can influence nutrient cycling and plant health, making it a key player in ecosystem dynamics. Furthermore, research into S. geniculata has revealed its potential as a model organism for studying bacterial adaptation and survival strategies in diverse environments. Its genetic and metabolic flexibility provides insights into how bacteria can thrive under varying conditions, which is crucial for understanding microbial life in both natural and engineered systems. In summary, Stenotrophomonas geniculata stands out due to its bioremediation potential, plant growth promotion, and its role in microbial ecology, making it a valuable subject for ongoing research in environmental and agricultural sciences.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Lysobacterales

Family: Lysobacteraceae

Genus: Stenotrophomonas

Species: Stenotrophomonas geniculata

NCBI ID

86188

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/034/508/895/GCF_034508895.1_ASM3450889v1

File for sequence-based predictions:
GCF_034508895.1_ASM3450889v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Stenotrophomonas geniculata is a Gram-negative bacterium that has gained attention due to its clinical relevance in various infections, particularly in immunocompromised patients. It is known to be associated with nosocomial infections, including pneumonia, bloodstream infections, and urinary tract infections. The organism is often found in hospital environments, making it a significant opportunistic pathogen. One of the critical aspects of Stenotrophomonas geniculata is its antimicrobial resistance. It exhibits resistance to multiple classes of antibiotics, including beta-lactams, aminoglycosides, and fluoroquinolones, which complicates treatment options. This resistance is often attributed to the presence of efflux pumps and the ability to form biofilms, which enhance its survival in hostile environments and contribute to its pathogenicity. In terms of immune evasion, Stenotrophomonas geniculata can modulate host immune responses, allowing it to persist in the human body despite the presence of an active immune system. This ability to evade detection and clearance by immune cells is a significant factor in its role as a pathogen. While Stenotrophomonas geniculata is primarily recognized for its pathogenic potential, there is ongoing research into its potential medical applications. Some studies suggest that certain strains may have probiotic properties, although this area requires further investigation to establish safety and efficacy. Overall, the clinical implications of Stenotrophomonas geniculata underscore the importance of monitoring and understanding this organism in healthcare settings.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Stenotrophomonas geniculata is a versatile bacterium commonly found in a variety of habitat types, particularly in soil and water environments. This microorganism thrives in nutrient-rich conditions, often associated with decaying organic matter, which provides essential nutrients for its growth and metabolic activities. Its presence is frequently noted in agricultural soils, where it plays a significant role in the nitrogen cycle by facilitating the breakdown of organic compounds and enhancing soil fertility through its ability to fix nitrogen. In addition to its role in soil ecosystems, Stenotrophomonas geniculata is also found in aquatic environments, including freshwater and marine ecosystems. Here, it contributes to the decomposition of organic materials, thus supporting nutrient cycling and energy flow within these ecosystems. This bacterium exhibits notable symbiotic relationships with various plants, promoting plant growth by enhancing nutrient availability and protecting against certain pathogens. Its adaptability to different environmental conditions, including varying pH levels and salinity, underscores its ecological significance. Overall, Stenotrophomonas geniculata is an important player in both terrestrial and aquatic biomes, contributing to ecosystem stability and biodiversity through its various interactions and roles.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Stenotrophomonas geniculata has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for its ability to produce a range of enzymes that can be harnessed in biocatalysis processes. These enzymes are particularly valuable in the food industry for fermentation processes, enhancing the flavor and preservation of food products. In the realm of waste management, Stenotrophomonas geniculata has demonstrated capabilities in biodegradation, particularly in the breakdown of pollutants and organic waste materials. This makes it a candidate for use in bioremediation strategies aimed at cleaning up contaminated environments, such as oil spills or heavy metal-laden sites. Furthermore, this microorganism has been explored for its role in biofuel production. Its metabolic pathways can be optimized to convert agricultural waste into bioethanol through fermentation, contributing to sustainable energy solutions. In pharmaceutical development, Stenotrophomonas geniculata has been studied for its potential to produce bioactive compounds that may have therapeutic effects. This includes the production of antimicrobial agents that can be used in the development of new drugs. Overall, the versatility of Stenotrophomonas geniculata in these various industrial sectors highlights its importance as a valuable microorganism in modern biotechnology and environmental management.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	N/A	true	false	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	true	false	true	false	true	true	true	false	true	false	false	true	true	true	true	true	true	false	false	false	false	true	true	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	false	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false
Host association	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Plant pathogenicity	TRUE	true ✓	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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