Gordonia desulfuricans

General Information

Gordonia desulfuricans is a fascinating microorganism that belongs to the genus Gordonia. This bacterium is particularly notable for its ability to degrade sulfur compounds, which makes it highly valuable in environmental biotechnology. The species was first isolated from a wastewater treatment plant, highlighting its potential role in bioremediation processes. One of the most interesting aspects of Gordonia desulfuricans is its capability to metabolize a wide range of sulfur-containing organic compounds. This includes the degradation of thiophenes, which are sulfur-containing heterocyclic compounds often found in fossil fuels. The bacterium's enzymatic pathways for sulfur metabolism are of significant interest to researchers aiming to develop more efficient methods for the desulfurization of fossil fuels, thereby reducing sulfur dioxide emissions and mitigating environmental pollution. Additionally, Gordonia desulfuricans has been studied for its potential in the biotransformation of various industrial pollutants. Its metabolic versatility allows it to participate in the breakdown of complex organic molecules, making it a promising candidate for use in bioreactors designed for the treatment of industrial effluents. From a taxonomic perspective, Gordonia desulfuricans is part of the Actinobacteria phylum, which includes many other species known for their complex secondary metabolites and biotechnological applications. The genus Gordonia itself is known for its diverse metabolic capabilities and environmental resilience, traits that are well exemplified by Gordonia desulfuricans. In summary, Gordonia desulfuricans stands out due to its remarkable sulfur-degrading abilities and its potential applications in environmental biotechnology, particularly in the areas of bioremediation and industrial waste treatment. Its unique metabolic pathways continue to be a subject of extensive research, offering promising avenues for sustainable environmental management and pollution control.

Gordonia desulfuricans is a fascinating actinobacterial species known for its unique metabolic capabilities, particularly in the degradation of sulfur-containing compounds. This organism is notable for its ability to utilize various organic sulfur compounds as a sole source of sulfur, which makes it an important player in biogeochemical sulfur cycles. Its capacity to degrade pollutants such as dibenzothiophene and other polycyclic aromatic sulfur compounds positions it as a potential candidate for bioremediation applications, especially in environments contaminated with petroleum products and other industrial waste. The strain exhibits a remarkable resilience to harsh environmental conditions, which is a characteristic feature of many members of the genus Gordonia. This resilience is attributed to its robust cell wall structure and metabolic versatility, allowing it to thrive in diverse habitats, including soil and aquatic environments. Furthermore, Gordonia desulfuricans has been studied for its biotechnological potential in the production of biofuels and bioproducts, as it can convert various substrates into valuable chemicals. Its unique enzymatic pathways for sulfur metabolism are of particular interest for researchers aiming to harness microbial processes for sustainable development. Overall, Gordonia desulfuricans stands out as a significant organism in environmental microbiology and biotechnology, offering insights into microbial ecology and potential applications in pollution management.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Mycobacteriales

Family: Gordoniaceae

Genus: Gordonia

Species: Gordonia desulfuricans

NCBI ID

89051

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/119/475/GCA_010119475.1_ASM1011947v1

File for sequence-based predictions:
GCA_010119475.1_ASM1011947v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia desulfuricans is a member of the genus Gordonia, which is known for its ability to degrade various environmental pollutants. While it is primarily recognized for its environmental significance, Gordonia desulfuricans has also been associated with human health implications. Clinical relevance arises from its potential role as an opportunistic pathogen, particularly in immunocompromised individuals. It has been implicated in infections such as skin and soft tissue infections, as well as respiratory infections, especially in patients with underlying conditions. One of the notable features of Gordonia desulfuricans is its antimicrobial resistance capabilities. It exhibits resistance to multiple antibiotics, which complicates treatment options for infections it may cause. This resistance is often attributed to the presence of efflux pumps and the ability to form biofilms, which enhance its survival in hostile environments, including the human body. In terms of immune evasion, Gordonia desulfuricans can alter its surface structures to avoid detection by the host immune system, making it a challenging pathogen to manage in clinical settings. While there are no widely recognized medical applications such as probiotics or vaccines specifically for Gordonia desulfuricans, its role in bioremediation highlights its potential utility in environmental health. However, its pathogenic potential necessitates further research to fully understand its implications in human health and disease.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Gordonia desulfuricans is a notable bacterium primarily associated with soil environments and wastewater treatment systems. This microorganism thrives in aerobic conditions and is particularly adept at degrading a variety of organic compounds, including those containing sulfur. Its presence is often linked to contaminated sites, where it plays a crucial role in bioremediation processes, helping to detoxify environments impacted by industrial activities. In soil biomes, Gordonia desulfuricans contributes to nutrient cycling, particularly in the breakdown of complex organic materials. It is known for its ability to form biofilms, which enhances its survival and efficiency in nutrient-rich environments. These biofilms can also provide a habitat for other microorganisms, fostering a diverse microbial community. In wastewater treatment systems, this bacterium is instrumental in the removal of sulfur compounds, thus preventing the release of harmful gases such as hydrogen sulfide. Its metabolic processes not only aid in the purification of water but also contribute to the overall health of the aquatic ecosystem by maintaining water quality and supporting aerobic microbial communities. Overall, Gordonia desulfuricans exemplifies the intricate relationships within its biomes, showcasing its role in symbiotic interactions with other microorganisms and its adaptability to various environmental conditions.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia desulfuricans has shown significant potential in various industrial applications, particularly in the fields of biotechnology, waste management, and biofuel production. This organism is known for its ability to degrade sulfur compounds, making it particularly valuable in waste treatment processes where sulfur removal is essential. Its enzymatic activity allows it to break down complex organic materials, which can be harnessed in biodegradation processes to treat industrial effluents and reduce environmental pollution. In the realm of biofuel production, Gordonia desulfuricans can be utilized in fermentation processes to convert organic waste into biofuels, such as biodiesel. The organism's metabolic pathways enable it to utilize various substrates, including those derived from agricultural waste, thus contributing to sustainable energy solutions. Moreover, the potential of Gordonia desulfuricans in pharmaceutical development is noteworthy, as it can produce valuable metabolites that may serve as precursors for drug synthesis. Its unique biochemical properties make it a candidate for further research in the production of novel compounds with therapeutic applications. Overall, Gordonia desulfuricans exemplifies a versatile microorganism with promising applications across multiple industries, particularly in enhancing environmental sustainability and contributing to the development of renewable energy sources.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-flash-1.5	google/gemini-pro-1.5	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	mistralai/mistral-7b-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemma-7b-it	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro
Motility	N/A	false	true	false	true	false	true	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain variable ✗	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	true	true	true	true	true	false	true	false	false	false	false	false	false	false	false	true	true	true	true	true	true	false	false	true	true
Host association	FALSE	true ✗	false ✓	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	true ✗	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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