Vibrio variabilis

General Information

Vibrio variabilis is a fascinating microorganism within the genus Vibrio, known for its remarkable adaptability and ecological versatility. One of the most intriguing aspects of V. variabilis is its ability to thrive in a variety of marine environments, ranging from coastal waters to deep-sea habitats. This adaptability is largely due to its versatile metabolic pathways, which allow it to utilize a wide range of organic and inorganic compounds for growth. A key characteristic of V. variabilis is its role in biogeochemical cycles, particularly in the nitrogen and sulfur cycles. It has been observed to participate in the degradation of organic matter, contributing to nutrient recycling in marine ecosystems. This makes V. variabilis an important player in maintaining the health and balance of marine environments. From a research perspective, V. variabilis is valuable due to its potential applications in biotechnology. Its ability to produce various enzymes and bioactive compounds has garnered interest for industrial and pharmaceutical applications. For instance, enzymes derived from V. variabilis have shown promise in bioremediation processes, where they can be used to break down pollutants in contaminated environments. Another noteworthy feature of V. variabilis is its genetic diversity. Studies have revealed a high degree of genetic variation within this species, which may contribute to its adaptability and resilience in changing environmental conditions. This genetic diversity also makes V. variabilis an interesting subject for evolutionary studies, as it provides insights into the mechanisms of adaptation and speciation in marine bacteria. In summary, Vibrio variabilis stands out due to its ecological importance, biotechnological potential, and genetic diversity. Its ability to adapt to diverse marine environments and its contributions to biogeochemical cycles make it a valuable organism for both environmental and applied microbiology research.

Vibrio variabilis is a fascinating marine bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This organism is primarily found in coastal waters and is known for its ability to thrive in environments with varying salinity levels, making it an excellent model for studying osmoregulation and adaptation mechanisms in marine microorganisms. One of the most interesting aspects of Vibrio variabilis is its capacity to produce a range of bioactive compounds, including antimicrobial substances. This characteristic positions it as a potential source for novel antibiotics, which is particularly valuable in the face of rising antibiotic resistance globally. Researchers are actively exploring the genetic and biochemical pathways involved in the synthesis of these compounds, which could lead to the development of new therapeutic agents. Additionally, Vibrio variabilis has been studied for its role in the marine ecosystem, particularly in nutrient cycling and its interactions with other marine organisms. Its ability to degrade organic matter contributes to the health of marine environments, making it a key player in maintaining ecological balance. Furthermore, the organism's genetic diversity and adaptability to different environmental conditions provide a rich area for research in evolutionary biology and environmental microbiology. Understanding how Vibrio variabilis adapts to its surroundings can offer insights into the resilience of marine life in the face of climate change and pollution. In summary, Vibrio variabilis stands out not only for its ecological significance but also for its potential contributions to medicine and environmental science, making it a valuable subject of study in microbiological research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Vibrionales

Family: Vibrionaceae

Genus: Vibrio

Species: Vibrio variabilis

NCBI ID

990271

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/263/785/GCF_003263785.1_ASM326378v1

File for sequence-based predictions:
GCF_003263785.1_ASM326378v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Vibrio variabilis is a marine bacterium that has been associated with various clinical implications, particularly in the context of infections and pathogenicity. It is known to inhabit coastal waters and can be found in association with seafood, which raises concerns regarding its potential role in foodborne illnesses. Infections caused by Vibrio variabilis can lead to gastroenteritis, characterized by symptoms such as diarrhea, abdominal pain, and vomiting, particularly in individuals with compromised immune systems or underlying health conditions. Severe cases may require medical intervention, especially in vulnerable populations. Furthermore, Vibrio variabilis has been noted for its potential antimicrobial resistance mechanisms, which complicate treatment options. The organism may harbor genes that confer resistance to commonly used antibiotics, making infections difficult to manage. This resistance is particularly concerning in the context of increasing global antibiotic resistance trends. In terms of immune evasion, Vibrio variabilis may employ various strategies to survive in the human host, including the production of biofilms and the ability to modulate host immune responses. These adaptations can enhance its survival and pathogenic potential. While Vibrio variabilis is not as widely studied as other members of the Vibrio genus, its presence in marine environments and association with seafood consumption necessitate further research to fully understand its clinical relevance and potential as a pathogen. Public health measures, including monitoring seafood safety and educating consumers about the risks associated with raw or undercooked seafood, are essential to mitigate the risks posed by this organism.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Vibrio variabilis is a marine bacterium commonly found in coastal waters and estuarine environments. This microorganism thrives in areas with high salinity and is often associated with brackish water where freshwater meets seawater. Its ecological niche is primarily within the microbial communities of these aquatic systems, where it plays a significant role in nutrient cycling and organic matter decomposition. In these biomes, Vibrio variabilis interacts with various organisms, including phytoplankton and zooplankton, contributing to the food web dynamics. It is known for its ability to degrade organic pollutants, thus aiding in the bioremediation of contaminated waters. Additionally, this bacterium can form symbiotic relationships with certain marine organisms, enhancing their nutrient uptake and overall health. The adaptability of Vibrio variabilis to fluctuating salinity levels and varying temperatures allows it to thrive in diverse marine habitats, from tidal pools to mangrove swamps. Its presence is often indicative of the health of the marine ecosystem, making it an important organism for ecological monitoring and research.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Vibrio variabilis has shown potential in various industrial applications, particularly in the fields of biotechnology, waste management, and pharmaceutical development. This organism is known for its ability to thrive in diverse environments, which makes it a candidate for several biotechnological processes. In biotechnology, Vibrio variabilis can be utilized in fermentation processes to produce valuable metabolites. Its unique metabolic pathways allow for the conversion of substrates into organic acids and other compounds that can be harnessed for industrial use. In the realm of waste management, Vibrio variabilis has demonstrated capabilities in biodegradation, particularly in the breakdown of pollutants in marine environments. This characteristic is crucial for the treatment of wastewater and the remediation of contaminated sites, where the organism can help in the detoxification of harmful substances. Furthermore, in pharmaceutical development, Vibrio variabilis is being explored for its potential to produce bioactive compounds that may have therapeutic applications. The organism's enzymatic activity can lead to the discovery of new drugs or the enhancement of existing pharmaceuticals through the production of novel metabolites. Overall, the versatility of Vibrio variabilis in these industrial sectors highlights its importance as a microorganism with significant potential for sustainable practices and innovative solutions in various industries.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	openai/gpt-3.5-turbo-0125	meta-llama/llama-3-70b-instruct:nitro	openai/gpt-4o	openai/gpt-4o	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	mistralai/mistral-7b-instruct	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	google/gemini-pro-1.5	google/gemini-pro-1.5	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	google/gemma-7b-it	google/gemma-7b-it	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b
Motility	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain variable ✗	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	beta	beta	beta	beta	N/A	gamma	N/A	N/A	N/A	beta	beta	N/A	N/A	beta	beta	N/A	N/A	beta	beta	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	N/A	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus

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