Paenibacillus dendritiformis

General Information

Paenibacillus dendritiformis is a fascinating microorganism known for its complex colony morphology and social behavior. This bacterium is particularly interesting due to its ability to form intricate, tree-like patterns, which are not only visually striking but also provide insights into the principles of self-organization and pattern formation in biological systems. The colonies of P. dendritiformis exhibit a high degree of differentiation, with distinct zones that can vary in cell density and structure, reflecting the organism's adaptive strategies to environmental conditions. One of the most remarkable features of P. dendritiformis is its cooperative behavior. The cells communicate and coordinate their movements through chemical signaling, a process known as quorum sensing. This allows the bacteria to optimize their growth and survival by forming protective biofilms and efficiently utilizing available resources. Additionally, P. dendritiformis produces a variety of secondary metabolites with potential applications in biotechnology and medicine. These compounds can have antimicrobial properties, making the bacterium a subject of interest for the development of new antibiotics. From a research perspective, P. dendritiformis serves as an excellent model organism for studying bacterial social interactions, pattern formation, and adaptive responses to environmental stress. Its unique characteristics make it a valuable organism for both fundamental biological research and potential biotechnological applications.

Paenibacillus dendritiformis is a fascinating bacterium known for its unique dendritic colony morphology, which resembles tree-like structures. This organism is a member of the genus Paenibacillus, which is notable for its diverse metabolic capabilities and ecological roles. One of the most interesting aspects of P. dendritiformis is its ability to produce a variety of extracellular enzymes, making it valuable in biotechnological applications, particularly in the degradation of complex organic materials. This enzymatic versatility allows it to thrive in various environments, including soil and decaying plant matter, where it plays a crucial role in nutrient cycling. Another remarkable feature of P. dendritiformis is its potential for biocontrol. Research has indicated that it can suppress certain plant pathogens, making it a candidate for use in sustainable agriculture practices. The ability to enhance plant health while reducing reliance on chemical pesticides highlights its ecological significance. Furthermore, P. dendritiformis has been studied for its role in bio-remediation processes, particularly in the breakdown of pollutants. Its capacity to metabolize various compounds positions it as a promising agent for environmental cleanup efforts. This characteristic not only underscores its ecological importance but also its potential utility in addressing environmental challenges. Overall, Paenibacillus dendritiformis stands out due to its unique morphological characteristics, enzymatic capabilities, and potential applications in agriculture and environmental science, making it a valuable subject for ongoing research.

Taxonomy

Superkingdom: Bacteria

Phylum: Bacillota

Class: Bacilli

Order: Bacillales

Family: Paenibacillaceae

Genus: Paenibacillus

Species: Paenibacillus dendritiformis

NCBI ID

130049

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/654/795/GCA_021654795.1_ASM2165479v1

File for sequence-based predictions:
GCA_021654795.1_ASM2165479v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The bacterium Paenibacillus dendritiformis is a member of the Paenibacillus genus, which is known for its diverse ecological roles and potential clinical implications. While P. dendritiformis is primarily recognized for its environmental presence, particularly in soil and plant rhizospheres, its clinical relevance is emerging. Clinical studies have indicated that this organism can be associated with certain infections, particularly in immunocompromised patients, although it is not a common pathogen. Its ability to form biofilms may contribute to its pathogenicity, making it a potential concern in nosocomial settings. Furthermore, P. dendritiformis has been studied for its antimicrobial resistance mechanisms, particularly in relation to its ability to survive in antibiotic-rich environments. This resistance can complicate treatment options for infections where this organism is implicated. Interestingly, there is ongoing research into the potential probiotic applications of P. dendritiformis, as some strains may exhibit beneficial properties that could enhance gut health or provide protective effects against certain pathogens. However, more research is needed to fully understand its role in human health and disease. In summary, while Paenibacillus dendritiformis is not widely recognized as a primary pathogen, its potential associations with infections, antimicrobial resistance, and possible probiotic benefits warrant further investigation to clarify its clinical significance.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Paenibacillus dendritiformis is a versatile bacterium commonly found in a variety of soil environments and rhizospheres. This microorganism thrives in nutrient-rich soils, particularly those that are well-aerated and have a balanced pH. Its presence is often associated with agricultural fields and grasslands, where it plays a crucial role in nutrient cycling and soil health. Soil Microhabitats: Within the soil, P. dendritiformis can be found in the microbial communities that form around plant roots, known as the rhizosphere. Here, it engages in symbiotic relationships with plants, promoting growth by enhancing nutrient availability, particularly nitrogen and phosphorus. This interaction is vital for plant health and productivity, making P. dendritiformis an important player in agricultural ecosystems. Decomposition and Nutrient Cycling: This bacterium is also involved in the decomposition of organic matter, contributing to the breakdown of complex organic compounds. By doing so, it helps release essential nutrients back into the soil, thus supporting the overall soil ecosystem. Its ability to degrade various organic materials makes it a key organism in bioremediation efforts, where it can help restore contaminated environments. Adaptation to Environmental Conditions: Paenibacillus dendritiformis exhibits remarkable adaptability to varying environmental conditions, including changes in moisture and temperature. This adaptability allows it to thrive in diverse habitats, from arid soils to wetlands, showcasing its ecological resilience. In summary, Paenibacillus dendritiformis is a significant microorganism within soil biomes, contributing to nutrient cycling, plant health, and environmental restoration through its various ecological roles.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The bacterium Paenibacillus dendritiformis has shown significant potential in various industrial applications due to its unique metabolic capabilities and enzymatic activities. One of the primary areas of interest is in biotechnology, where Paenibacillus dendritiformis is utilized in fermentation processes to produce valuable metabolites. This organism is known for its ability to degrade complex organic materials, making it a candidate for waste management applications, particularly in the treatment of agricultural and industrial waste. Its enzymatic activity allows it to break down lignocellulosic biomass, which can be harnessed for the production of biofuels. In the realm of pharmaceutical development, Paenibacillus dendritiformis has been studied for its potential to produce antimicrobial compounds, which could lead to the development of new antibiotics. Additionally, its role in biodegradation processes highlights its importance in environmental biotechnology, where it can help in the remediation of contaminated sites by breaking down pollutants. Overall, the diverse applications of Paenibacillus dendritiformis in these industries underscore its significance as a versatile microorganism in modern biotechnology.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	meta-llama/llama-3-8b-instruct:nitro	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	openchat/openchat-7b	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain variable ✗	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerotolerant ✗	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biofilm formation	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Animal pathogenicity	FALSE	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	true	true	true	true	true	true	false	false	true	true	true	true	false	false	false	false	true	true	false	false	true	true	false	false	true	true	false	false
Host association	FALSE	false ✓	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Plant pathogenicity	FALSE	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Spore formation	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓
Hemolysis	N/A	N/A	gamma	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	N/A	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus

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