Sandarakinorhabdus limnophila

General Information

Sandarakinorhabdus limnophila is a fascinating microorganism that belongs to the phylum Bacteroidota. This bacterium is particularly interesting due to its unique pigmentation, which is a result of the production of carotenoid compounds. These pigments not only give the bacterium its distinctive color but also play a role in protecting it from oxidative stress, making it a subject of interest in studies related to microbial stress responses and potential biotechnological applications in antioxidant production. Another notable feature of Sandarakinorhabdus limnophila is its ability to degrade complex organic compounds. This capability is significant for environmental microbiology, as it suggests a role for this bacterium in the breakdown and recycling of organic matter in aquatic ecosystems. Researchers are particularly interested in its enzymatic pathways and metabolic processes, which could have implications for bioremediation and waste management. Moreover, Sandarakinorhabdus limnophila has been isolated from freshwater environments, indicating its adaptability to various aquatic habitats. This adaptability makes it a valuable model organism for studying microbial ecology and the dynamics of microbial communities in freshwater systems. In summary, Sandarakinorhabdus limnophila stands out due to its distinctive pigmentation, organic compound degradation capabilities, and ecological versatility, making it a microorganism of considerable interest in both basic and applied microbiological research.

Sandarakinorhabdus limnophila is a fascinating member of the microbial world, primarily known for its unique ecological niche and metabolic capabilities. This organism is a freshwater bacterium that thrives in limnic environments, which are characterized by their low salinity and nutrient-rich conditions. Its ability to adapt to such specific habitats makes it a valuable subject for studying microbial ecology and biogeochemical cycles in freshwater ecosystems. One of the most interesting aspects of S. limnophila is its role in the degradation of organic matter. It possesses specialized enzymatic pathways that allow it to break down complex organic compounds, contributing to nutrient cycling in aquatic environments. This capability not only highlights its ecological importance but also positions it as a potential candidate for biotechnological applications, particularly in bioremediation efforts aimed at cleaning up polluted freshwater systems. Furthermore, S. limnophila has been noted for its unique metabolic pathways, which may include the utilization of alternative electron donors and acceptors. This metabolic versatility allows it to thrive in varying environmental conditions, making it a model organism for studying metabolic adaptation and evolution in bacteria. In addition to its ecological and biotechnological significance, S. limnophila is also of interest in the field of microbial phylogenetics. Its distinct genetic makeup and evolutionary history provide insights into the diversification of freshwater bacteria and their evolutionary relationships with other microbial taxa. This can enhance our understanding of microbial evolution and the ecological roles that different species play in their respective environments. Overall, Sandarakinorhabdus limnophila stands out as a unique and valuable organism for research, offering opportunities to explore its ecological roles, metabolic capabilities, and evolutionary significance in freshwater ecosystems.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Alphaproteobacteria

Order: Sphingomonadales

Family: Sphingosinicellaceae

Genus: Sandarakinorhabdus

Species: Sandarakinorhabdus limnophila

NCBI ID

210512

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/653/135/GCA_023653135.1_ASM2365313v1

File for sequence-based predictions:
GCA_023653135.1_ASM2365313v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Sandarakinorhabdus limnophila is a member of the phylum Bacteroidetes and has been primarily studied in the context of aquatic environments. While its direct clinical implications in human health are not extensively documented, it is important to consider its potential role in microbial ecology and biogeochemical cycles in freshwater systems. This organism may contribute to the degradation of organic matter and nutrient cycling, which can indirectly influence human health through the maintenance of water quality. However, the clinical relevance of Sandarakinorhabdus limnophila may be more pronounced in the context of opportunistic infections in immunocompromised individuals, although specific cases have not been widely reported. Its presence in aquatic environments suggests a potential for pathogenicity under certain conditions, particularly in individuals with weakened immune systems. Furthermore, the organism's interactions with other microbial communities could have implications for antimicrobial resistance dynamics, as it may harbor or exchange resistance genes with other bacteria. Understanding the ecological role of Sandarakinorhabdus limnophila could provide insights into its potential impact on human health, especially in relation to waterborne diseases and the overall health of aquatic ecosystems. In summary, while Sandarakinorhabdus limnophila does not have well-documented direct clinical implications, its ecological role and potential interactions with human health warrant further investigation.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Sandarakinorhabdus limnophila is a microorganism primarily associated with freshwater ecosystems, particularly in environments characterized by lentic waters such as lakes and ponds. This organism thrives in the phytoplankton-rich zones of these habitats, where it plays a crucial role in nutrient cycling and organic matter decomposition. Its presence is often linked to the microbial food web, contributing to the overall productivity of the ecosystem by breaking down complex organic materials into simpler compounds that can be utilized by other organisms. In terms of ecological interactions, S. limnophila exhibits notable symbiotic relationships with various aquatic plants and algae, enhancing their nutrient uptake and promoting a balanced ecosystem. This microorganism is also adapted to varying temperature ranges and pH levels, allowing it to thrive in diverse freshwater environments. Its ability to withstand fluctuations in environmental conditions underscores its importance in maintaining the stability of these biomes. Overall, Sandarakinorhabdus limnophila is a vital component of freshwater biomes, contributing to the health and sustainability of aquatic ecosystems through its roles in nutrient cycling, organic matter decomposition, and symbiotic interactions.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Sandarakinorhabdus limnophila has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where it can be utilized in fermentation processes to produce valuable metabolites. This organism is known for its ability to thrive in aquatic environments, making it a candidate for bioprocesses that require specific conditions found in freshwater ecosystems. In the realm of waste management, Sandarakinorhabdus limnophila has demonstrated capabilities in biodegradation, particularly in the breakdown of organic pollutants in water bodies. This property can be harnessed to develop bioremediation strategies aimed at cleaning up contaminated water sources, thus contributing to environmental sustainability. Furthermore, the organism's enzymatic activity can be explored for biofuel production. By utilizing its metabolic pathways, researchers can investigate the potential for converting biomass into biofuels through enzymatic hydrolysis, which could lead to more efficient and sustainable energy sources. In pharmaceutical development, the unique biochemical properties of Sandarakinorhabdus limnophila may be leveraged to discover novel compounds with therapeutic potential. The organism's ability to produce specific enzymes could be crucial in the synthesis of pharmaceuticals, enhancing the efficiency of drug production processes. Overall, Sandarakinorhabdus limnophila presents a promising avenue for innovation across multiple industries, particularly in biotechnology, waste management, biofuel production, and pharmaceutical development, through its involvement in fermentation, biodegradation, and enzyme production.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	openchat/openchat-7b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	N/A	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain positive ✗	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain positive ✗	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biofilm formation	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biosafety level	N/A	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 2	biosafety level 2	biosafety level 1	biosafety level 1
Health association	N/A	true	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	true	true	true	true	true	true	false	false
Host association	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	N/A	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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