Vibrio ezurae

General Information

Vibrio ezurae is a fascinating microorganism belonging to the genus Vibrio, which is well-known for its diverse and ecologically significant species. This particular species was first isolated from the intestines of the Japanese flounder, Paralichthys olivaceus, highlighting its association with marine life. One of the key characteristics of Vibrio ezurae is its ability to thrive in saline environments, which makes it an important subject of study in marine microbiology and ecology. The species is notable for its potential role in the health and disease of marine organisms, particularly fish. This makes Vibrio ezurae valuable for research in aquaculture, where understanding the microbial communities associated with fish can lead to better management practices and disease prevention strategies. Additionally, the study of Vibrio ezurae can provide insights into the complex interactions between marine microorganisms and their hosts, contributing to our broader understanding of marine ecosystems. Another interesting aspect of Vibrio ezurae is its genetic makeup, which can offer clues about the evolutionary adaptations that enable survival in marine environments. Researchers can explore its genome to identify genes responsible for salt tolerance, nutrient acquisition, and interactions with host organisms. This genetic information can be crucial for developing biotechnological applications, such as probiotics for aquaculture or novel antimicrobial compounds. In summary, Vibrio ezurae is a valuable organism for scientific research due to its ecological role, potential applications in aquaculture, and the insights it provides into marine microbial life. Its study not only enhances our understanding of marine biology but also holds promise for practical applications in improving fish health and managing marine resources.

Vibrio ezurae is a fascinating marine bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This organism is primarily found in coastal waters and is known for its ability to thrive in saline environments, which makes it an important player in marine ecosystems. One of the most interesting aspects of Vibrio ezurae is its role in the degradation of organic matter in marine sediments, contributing to nutrient cycling and the overall health of marine habitats. The genome of Vibrio ezurae has been sequenced, revealing a wealth of genetic information that underscores its metabolic versatility. This bacterium possesses a range of genes that enable it to utilize various substrates, making it a candidate for bioremediation efforts in polluted marine environments. Its enzymatic capabilities allow it to break down complex organic compounds, which can be particularly valuable in the context of oil spills or other environmental contaminants. Additionally, Vibrio ezurae has been studied for its potential in aquaculture. Its presence in marine environments can influence the health of fish populations, and understanding its interactions with other marine organisms can lead to improved practices in fish farming. The bacterium's ability to produce certain metabolites may also have implications for the development of natural preservatives or antimicrobial agents. In summary, Vibrio ezurae stands out not only for its ecological significance but also for its potential applications in environmental science and aquaculture, making it a valuable subject for ongoing research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Vibrionales

Family: Vibrionaceae

Genus: Vibrio

Species: Vibrio ezurae

NCBI ID

252583

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/568/985/GCF_003568985.1_Vezurae

File for sequence-based predictions:
GCF_003568985.1_Vezurae_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Vibrio ezurae is a marine bacterium that has been associated with various clinical implications, particularly in the context of infections related to seafood consumption. It is part of the Vibrio genus, which includes several species known to cause gastroenteritis and other illnesses in humans. While Vibrio ezurae is less commonly reported than its relatives, such as Vibrio cholerae and Vibrio parahaemolyticus, it has been implicated in cases of wound infections and gastrointestinal diseases following exposure to contaminated water or seafood. Pathogenicity of Vibrio ezurae is primarily linked to its ability to produce toxins and adhere to intestinal mucosa, which can lead to diarrheal diseases. The organism's survival in marine environments suggests a potential for outbreaks in coastal areas, especially during warmer months when seafood consumption increases. In terms of antimicrobial resistance, there is limited data on Vibrio ezurae, but like many Vibrio species, it may exhibit resistance to common antibiotics, complicating treatment options for infections. This highlights the importance of monitoring and understanding the resistance patterns of this organism. Furthermore, the role of Vibrio ezurae in human health is not fully understood, but it may have potential applications in probiotics or as a model organism for studying marine microbiomes. Overall, while Vibrio ezurae is not as well-documented as other Vibrio species, its presence in marine environments and association with seafood-related illnesses warrant further investigation into its clinical relevance.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Vibrio ezurae is a marine bacterium commonly found in coastal waters and estuarine environments. This microorganism thrives in brackish waters, where it plays a significant role in the nutrient cycling of these ecosystems. Its presence is often associated with mangrove forests and salt marshes, where it contributes to the breakdown of organic matter, thus enhancing the overall productivity of these habitats. In terms of ecological interactions, Vibrio ezurae is known for its symbiotic relationships with various marine organisms, including fish and invertebrates. It can be found in the gut microbiota of certain fish species, where it aids in digestion and nutrient absorption. This relationship not only benefits the host but also allows Vibrio ezurae to thrive in nutrient-rich environments. Additionally, Vibrio ezurae exhibits remarkable environmental adaptability, allowing it to withstand fluctuations in salinity and temperature, which are common in its native habitats. This adaptability is crucial for its survival in the dynamic conditions of coastal ecosystems, where it can rapidly respond to changes in environmental parameters. Overall, Vibrio ezurae is an integral component of its biome, contributing to the health and stability of marine ecosystems through its roles in nutrient cycling and symbiotic interactions.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Vibrio ezurae has shown potential in various industrial applications, particularly in the fields of biotechnology, waste management, and pharmaceutical development. This organism is known for its ability to thrive in marine environments, which can be harnessed for several beneficial processes. In biotechnology, Vibrio ezurae is involved in fermentation processes that can be utilized for the production of bioactive compounds. These compounds may have applications in the development of new pharmaceuticals or nutraceuticals, showcasing the organism's potential in drug discovery and development. In the realm of waste management, Vibrio ezurae has demonstrated capabilities in biodegradation, particularly in the breakdown of organic pollutants in marine environments. This property can be leveraged for the treatment of wastewater, especially in coastal areas where marine pollution is a concern. The organism's enzymatic activity can facilitate the degradation of complex organic materials, making it a valuable asset in bioremediation efforts. Furthermore, Vibrio ezurae has been studied for its potential in biofuel production. Its metabolic pathways can be optimized for the conversion of biomass into biofuels through fermentation, providing a sustainable alternative to fossil fuels. This application is particularly relevant in the context of renewable energy sources. Overall, Vibrio ezurae presents a multifaceted opportunity for various industries, particularly in enhancing processes related to biotechnology, waste management, and biofuel production, through its unique metabolic capabilities and environmental adaptability.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	meta-llama/llama-3-70b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	google/gemini-flash-1.5	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b
Motility	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Gram staining	gram stain negative	N/A	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	beta	beta	N/A	N/A	beta	N/A	gamma	N/A	N/A	N/A	N/A	N/A	beta	beta	N/A	N/A	beta	beta	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗	bacillus ✓	bacillus ✓

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