Pseudomonas oleovorans

General Information

Pseudomonas oleovorans is a fascinating microorganism known for its remarkable metabolic versatility. This bacterium is particularly interesting due to its ability to degrade a wide range of hydrocarbons, making it a valuable candidate for bioremediation efforts. One of the most notable features of P. oleovorans is its capacity to produce polyhydroxyalkanoates (PHAs), which are biodegradable polymers with potential applications in the production of bioplastics. The organism's ability to thrive in diverse environments, including soil and water contaminated with oil, underscores its adaptability and ecological significance. P. oleovorans has been extensively studied for its role in the biodegradation of alkanes, a process that involves the oxidation of these compounds to more accessible forms of carbon. This capability is not only crucial for environmental cleanup but also offers insights into the metabolic pathways that enable such degradation. Moreover, P. oleovorans has been a subject of interest in the field of synthetic biology. Researchers have explored its genetic and enzymatic systems to engineer strains capable of producing specific biochemicals from renewable resources. The organism's robust genetic toolkit and the ease with which it can be manipulated make it an excellent model for studying microbial metabolism and for developing biotechnological applications. In summary, Pseudomonas oleovorans stands out due to its hydrocarbon-degrading abilities, its potential in bioplastic production, and its utility in synthetic biology. These characteristics make it a valuable organism for both environmental and industrial applications.

Pseudomonas oleovorans is a fascinating bacterium known for its unique ability to utilize hydrocarbons as a carbon source, particularly those found in oil. This characteristic makes it a valuable organism in the field of bioremediation, where it can be employed to clean up oil spills and other hydrocarbon pollutants in the environment. Its metabolic versatility allows it to degrade a wide range of aliphatic and aromatic hydrocarbons, which is crucial for environmental applications aimed at reducing pollution levels. One of the most interesting aspects of Pseudomonas oleovorans is its capacity for biodegradation, which is facilitated by a variety of enzymes that can break down complex organic compounds. This ability not only highlights its potential in environmental biotechnology but also makes it a subject of interest for researchers studying microbial metabolism and enzymatic pathways. Additionally, Pseudomonas oleovorans has been explored for its potential in bioconversion processes, where it can be used to produce valuable bioproducts from waste materials. Its ability to thrive in diverse environments, including soil and water contaminated with hydrocarbons, underscores its ecological significance and adaptability. Overall, Pseudomonas oleovorans stands out as a model organism for studying hydrocarbon degradation and offers promising applications in environmental science and industrial biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas oleovorans

NCBI ID

301

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/814/875/GCF_029814875.1_ASM2981487v1

File for sequence-based predictions:
GCF_029814875.1_ASM2981487v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas oleovorans is a gram-negative bacterium known for its ability to degrade hydrocarbons and its potential role in bioremediation. While it is not typically associated with human disease, it can be an opportunistic pathogen, particularly in immunocompromised individuals. Clinical implications of Pseudomonas oleovorans include its potential to cause infections in patients with underlying health conditions, such as those with cystic fibrosis or those undergoing invasive procedures. The organism's ability to form biofilms contributes to its pathogenicity, making it a concern in clinical settings. Furthermore, it exhibits antimicrobial resistance, which complicates treatment options. The mechanisms of resistance include the production of beta-lactamases and efflux pumps, which can lead to resistance against commonly used antibiotics. Although Pseudomonas oleovorans is primarily studied for its environmental applications, its interactions with the human body and potential to cause infections highlight the need for continued research into its clinical relevance. Overall, while it is not a primary pathogen, its opportunistic nature and resistance mechanisms warrant attention in healthcare settings.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas oleovorans is a versatile bacterium primarily associated with oil-contaminated environments and aerobic conditions. This microorganism thrives in habitats where hydrocarbons are present, such as oil spills, industrial waste sites, and marine environments affected by petroleum pollution. Its ability to degrade a wide range of hydrocarbons makes it a crucial player in bioremediation processes, where it helps to restore contaminated ecosystems by breaking down toxic compounds into less harmful substances. In these oil-rich habitats, Pseudomonas oleovorans exhibits metabolic versatility, utilizing various carbon sources, particularly aliphatic hydrocarbons. This adaptability allows it to occupy a unique ecological niche, where it not only survives but also contributes to the cycling of nutrients within the ecosystem. Furthermore, Pseudomonas oleovorans often engages in symbiotic relationships with other microorganisms, enhancing the degradation process through cooperative interactions. For instance, it can work alongside fungi and other bacteria to improve the efficiency of hydrocarbon breakdown, showcasing its role in a complex microbial community. In addition to its ecological significance, this bacterium demonstrates remarkable environmental adaptation capabilities, allowing it to withstand harsh conditions such as high salinity and varying temperatures. This resilience further solidifies its presence in diverse biomes, particularly those impacted by human activities, where it plays a vital role in mitigating environmental damage.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas oleovorans is recognized for its significant contributions to various industrial applications. One of the most notable areas is in biotechnology, where Pseudomonas oleovorans is utilized for its ability to metabolize hydrocarbons, making it a valuable organism in biodegradation processes. This capability allows it to break down pollutants in oil spills and other hydrocarbon-contaminated environments, thus playing a crucial role in environmental cleanup efforts. In the realm of biofuel production, Pseudomonas oleovorans is particularly important due to its capacity to convert fatty acids into biodiesel through fermentation processes. This conversion not only aids in producing renewable energy sources but also contributes to reducing reliance on fossil fuels. Furthermore, Pseudomonas oleovorans has been explored for its potential in pharmaceutical development. The organism is known to produce various enzymes that can be harnessed for drug synthesis and other therapeutic applications. Its enzymatic activity is particularly valuable in the production of chiral compounds, which are essential in the pharmaceutical industry. Additionally, Pseudomonas oleovorans is involved in waste management through its ability to degrade complex organic materials, making it a candidate for waste treatment processes. By utilizing this microorganism, industries can enhance the efficiency of waste decomposition, leading to more sustainable waste management practices. Overall, the diverse capabilities of Pseudomonas oleovorans in biodegradation, fermentation, and enzyme production underscore its importance across multiple sectors, highlighting its potential as a key player in advancing industrial biotechnology and environmental sustainability.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	anthropic/claude-3-haiku:beta	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	google/gemma-7b-it	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	google/gemini-pro	google/gemini-pro
Motility	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biofilm formation	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	true	false	false	false	false	true	false	false	false	true	true	true	true	false	false	true	true	true	true	true	true	false	false	false	false	false	false
Host association	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	N/A	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus

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