Paraburkholderia terrae

General Information

Paraburkholderia terrae is a fascinating microorganism that belongs to the genus Paraburkholderia. This genus is known for its diverse metabolic capabilities and environmental versatility. One of the most intriguing aspects of P. terrae is its ability to thrive in soil environments, where it plays a crucial role in nutrient cycling and organic matter decomposition. What makes Paraburkholderia terrae particularly interesting is its potential for bioremediation. This organism has been shown to degrade a variety of pollutants, including aromatic hydrocarbons and pesticides, making it a valuable candidate for cleaning up contaminated environments. Additionally, P. terrae has been studied for its plant growth-promoting properties. It can form beneficial associations with plant roots, enhancing nutrient uptake and providing protection against pathogens. From a research perspective, Paraburkholderia terrae is also notable for its genetic diversity and adaptability. Its genome contains a wide array of genes involved in stress response, secondary metabolite production, and symbiotic interactions. This genetic toolkit allows P. terrae to survive in diverse and often challenging environments, making it a model organism for studying microbial ecology and evolution. In summary, Paraburkholderia terrae is a microorganism of significant interest due to its bioremediation potential, plant growth-promoting abilities, and genetic adaptability. These characteristics make it a valuable subject for ongoing research in environmental microbiology and biotechnology.

Paraburkholderia terrae is a fascinating bacterium that belongs to the Burkholderia genus, known for its diverse metabolic capabilities and ecological significance. This organism is particularly interesting due to its ability to degrade a variety of organic compounds, making it a valuable player in bioremediation processes. Its capacity to break down pollutants such as aromatic hydrocarbons and other environmental contaminants positions P. terrae as a potential candidate for cleaning up contaminated sites, especially in soil environments. One of the unique aspects of P. terrae is its role in the nitrogen cycle. It can fix atmospheric nitrogen, which is crucial for soil fertility and plant growth. This ability not only enhances soil quality but also contributes to sustainable agricultural practices. The ecological interactions of P. terrae with plants and other microorganisms further underscore its importance in maintaining healthy ecosystems. From a research perspective, P. terrae serves as an excellent model organism for studying microbial metabolism and environmental microbiology. Its genome has been sequenced, providing insights into its metabolic pathways and genetic adaptations to various environmental stresses. This genomic information can be leveraged to explore genetic engineering applications aimed at enhancing its bioremediation capabilities. Overall, Paraburkholderia terrae stands out as a remarkable microorganism with significant implications for environmental science and biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Paraburkholderia

Species: Paraburkholderia terrae

NCBI ID

311230

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/885/575/GCA_020885575.1_ASM2088557v1

File for sequence-based predictions:
GCA_020885575.1_ASM2088557v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Paraburkholderia terrae is a member of the Burkholderia genus, which is known for its diverse ecological roles and potential clinical implications. While P. terrae is primarily recognized for its environmental presence, particularly in soil, it has been associated with certain clinical contexts. Clinical relevance arises from its potential to act as an opportunistic pathogen, particularly in immunocompromised individuals. Infections caused by P. terrae can lead to respiratory infections, wound infections, and bacteremia, especially in patients with underlying health conditions. One of the significant concerns regarding P. terrae is its antimicrobial resistance. This organism exhibits resistance to multiple classes of antibiotics, which complicates treatment options for infections. The mechanisms of resistance may involve the production of beta-lactamases and other efflux pumps, which can render standard antibiotic therapies ineffective. In terms of immune evasion, P. terrae can manipulate host immune responses, allowing it to persist in the human body and evade detection by the immune system. This ability to evade the immune response is particularly concerning in clinical settings, where timely diagnosis and treatment are critical. While P. terrae is not commonly associated with outbreaks, its presence in clinical specimens highlights the need for vigilance in monitoring for infections, especially in patients with compromised immune systems. Overall, understanding the clinical implications of Paraburkholderia terrae is essential for improving patient outcomes and managing potential infections effectively.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Paraburkholderia terrae is a versatile bacterium commonly found in a variety of soil environments and rhizospheres. This microorganism thrives in nutrient-rich soils, particularly those that are disturbed or have been subjected to agricultural practices. Its ability to adapt to different soil types allows it to play a significant role in the soil ecosystem, where it contributes to nutrient cycling and organic matter decomposition. In its natural habitat, Paraburkholderia terrae engages in symbiotic relationships with plant roots, enhancing nutrient uptake, particularly nitrogen, which is crucial for plant growth. This interaction not only benefits the plants but also improves soil health and fertility, making it an essential player in agricultural biomes. Additionally, Paraburkholderia terrae is known for its ability to degrade various organic pollutants, thus playing a role in bioremediation efforts. This capability allows it to thrive in contaminated soils, where it helps to restore ecological balance by breaking down harmful substances. Overall, Paraburkholderia terrae is a key organism in terrestrial ecosystems, contributing to both plant health and environmental sustainability through its diverse interactions and adaptations.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Paraburkholderia terrae has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where Paraburkholderia terrae is utilized for its ability to perform biodegradation of environmental pollutants. This capability makes it a valuable asset in waste management, particularly in the treatment of contaminated soils and water, where it can break down harmful compounds, thus aiding in the restoration of ecosystems. In the realm of biofuel production, Paraburkholderia terrae has been studied for its metabolic pathways that can convert organic materials into biofuels through fermentation. This process not only contributes to renewable energy sources but also helps in reducing waste by utilizing agricultural residues and other organic waste materials. Furthermore, Paraburkholderia terrae has potential applications in pharmaceutical development. Its unique enzymatic activities can be harnessed for the production of bioactive compounds, which may lead to the discovery of new drugs or therapeutic agents. The organism's ability to produce specific enzymes can facilitate enzyme production for various industrial processes, including those in the food and beverage industry, where enzymes are crucial for improving product quality and efficiency. Overall, Paraburkholderia terrae exemplifies the versatility of microorganisms in addressing environmental challenges and contributing to sustainable industrial practices.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	google/gemini-pro-1.5	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat
Motility	N/A	true	true	true	false	true	true	true	true	false	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Biofilm formation	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Animal pathogenicity	TRUE	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	false	true	true	true	false	false	false	false	false	true	true	true	true	true	true	false	false	true	true	true	true	true	true
Host association	N/A	false	false	false	true	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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