Paenibacillus terrigena

General Information

Paenibacillus terrigena is a fascinating microorganism that belongs to the genus Paenibacillus, which is known for its diverse metabolic capabilities and ecological versatility. One of the most intriguing aspects of P. terrigena is its ability to degrade a wide range of complex organic compounds, making it a valuable organism for bioremediation efforts. This species has been isolated from soil environments, where it plays a crucial role in nutrient cycling and organic matter decomposition. What makes Paenibacillus terrigena particularly interesting is its production of various extracellular enzymes, such as cellulases, xylanases, and proteases. These enzymes enable the breakdown of plant biomass, which is essential for the recycling of organic materials in the ecosystem. The ability to produce these enzymes also makes P. terrigena a candidate for industrial applications, including the production of biofuels and the processing of agricultural waste. Another unique feature of P. terrigena is its potential for promoting plant growth. Some strains of Paenibacillus are known to produce phytohormones and other growth-promoting substances, which can enhance plant health and yield. This characteristic is of significant interest in sustainable agriculture, where P. terrigena could be used as a biofertilizer to reduce the reliance on chemical fertilizers. In addition to its environmental and agricultural applications, Paenibacillus terrigena has been studied for its antimicrobial properties. The production of antimicrobial compounds by this species can inhibit the growth of plant pathogens and other harmful microorganisms, offering a natural means of disease control. Overall, Paenibacillus terrigena is a versatile and valuable microorganism with a wide range of applications in bioremediation, agriculture, and industry. Its ability to degrade complex organic compounds, promote plant growth, and produce antimicrobial substances underscores its importance in both natural ecosystems and human endeavors.

Paenibacillus terrigena is a fascinating bacterium that belongs to the genus Paenibacillus, which is known for its diverse metabolic capabilities and ecological significance. This species is particularly interesting due to its ability to thrive in soil environments, where it plays a crucial role in nutrient cycling and soil health. Its capacity to degrade complex organic materials makes it valuable for bioremediation efforts, as it can help break down pollutants and improve soil quality. One of the unique features of Paenibacillus terrigena is its production of various enzymes, including cellulases and xylanases, which are essential for the degradation of plant biomass. This characteristic not only contributes to its ecological role but also positions it as a potential candidate for industrial applications, particularly in the biofuel sector, where efficient biomass conversion is critical. Additionally, Paenibacillus terrigena has been studied for its antimicrobial properties, which may offer insights into developing new antibiotics or biocontrol agents in agriculture. Its ability to produce secondary metabolites that inhibit the growth of pathogenic microorganisms highlights its potential in sustainable agricultural practices. Overall, the ecological importance, enzymatic versatility, and antimicrobial potential of Paenibacillus terrigena make it a valuable organism for both environmental and industrial research, paving the way for innovative applications in biotechnology and agriculture.

Taxonomy

Superkingdom: Bacteria

Phylum: Bacillota

Class: Bacilli

Order: Bacillales

Family: Paenibacillaceae

Genus: Paenibacillus

Species: Paenibacillus terrigena

NCBI ID

369333

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/963/529/435/GCA_963529435.1_ERR9969148_bin.22_MetaWRAP_v1.3_MAG

File for sequence-based predictions:
GCA_963529435.1_ERR9969148_bin.22_MetaWRAP_v1.3_MAG_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The bacterium Paenibacillus terrigena is a Gram-positive, rod-shaped microorganism that has garnered attention for its potential clinical implications. It is primarily found in soil and has been associated with various environmental and agricultural contexts. However, its relevance in human health is emerging, particularly in relation to its role in infections and immune response modulation. Clinical associations of Paenibacillus terrigena include its identification in cases of bacteremia and wound infections, particularly in immunocompromised patients. The organism's ability to produce a range of enzymes and metabolites may contribute to its pathogenicity, although the exact mechanisms remain under investigation. One notable aspect of Paenibacillus terrigena is its potential for antimicrobial resistance. Some strains have shown resistance to common antibiotics, raising concerns about treatment options in infected individuals. This resistance may be attributed to the organism's natural habitat, where it is exposed to various antimicrobial agents, leading to the development of resistance mechanisms. In terms of medical applications, there is ongoing research into the use of Paenibacillus terrigena as a probiotic, given its ability to produce beneficial compounds that may enhance gut health and modulate the immune response. However, more studies are needed to fully understand its safety and efficacy in this context. Overall, while Paenibacillus terrigena is not yet widely recognized as a significant human pathogen, its potential role in infections, antimicrobial resistance, and possible therapeutic applications warrants further investigation.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Paenibacillus terrigena is a soil-dwelling bacterium that thrives in a variety of terrestrial ecosystems. This microorganism is commonly found in agricultural soils, grasslands, and forested areas, where it plays a crucial role in nutrient cycling and soil health. Its ability to degrade organic matter contributes to the formation of humus, enhancing soil fertility and structure. Ecological Niches: Paenibacillus terrigena occupies a unique ecological niche as a decomposer, breaking down complex organic materials and releasing essential nutrients back into the soil. This process not only supports plant growth but also fosters a diverse microbial community, promoting overall ecosystem stability. Habitat Features: This bacterium is particularly adept at surviving in nutrient-rich environments where organic matter is abundant. It can be found in the rhizosphere, the region of soil surrounding plant roots, where it engages in beneficial interactions with plants. These interactions can include plant growth promotion through the production of phytohormones and the enhancement of nutrient uptake. Notable Interactions: Paenibacillus terrigena is known for its symbiotic relationships with various plants, aiding in their growth and resilience against pathogens. Its presence in the soil can lead to increased plant health and productivity, making it an important player in agricultural ecosystems. Additionally, it can compete with harmful microorganisms, thus contributing to the overall health of the soil microbiome. In summary, Paenibacillus terrigena is a vital component of terrestrial biomes, particularly in agricultural and natural soils, where it enhances soil quality, supports plant health, and contributes to the intricate web of life within these ecosystems.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The bacterium Paenibacillus terrigena has shown significant potential in various industrial applications due to its unique metabolic capabilities. One of the primary areas of interest is in biotechnology, where Paenibacillus terrigena is utilized for its ability to produce a range of enzymes that can be harnessed in biocatalysis and bioprocessing. These enzymes are particularly valuable in the food industry for processes such as fermentation, where they can enhance flavor profiles and improve the efficiency of production processes. In the realm of waste management, Paenibacillus terrigena has demonstrated effectiveness in biodegradation of organic pollutants. Its ability to break down complex organic materials makes it a candidate for use in bioremediation efforts, where contaminated sites can be treated to reduce environmental impact. This application is crucial in addressing pollution from industrial waste and agricultural runoff. Furthermore, the potential of Paenibacillus terrigena in biofuel production is noteworthy. The organism can be involved in fermentation processes that convert biomass into biofuels, such as ethanol. This capability aligns with the growing demand for sustainable energy sources and the reduction of reliance on fossil fuels. In pharmaceutical development, Paenibacillus terrigena has been explored for its production of bioactive compounds that may have therapeutic properties. The extraction and characterization of these compounds could lead to the development of new drugs or health supplements, showcasing the organism's versatility in the pharmaceutical industry. Overall, Paenibacillus terrigena represents a valuable microorganism with diverse applications across multiple industries, particularly in biotechnology, waste management, biofuel production, and pharmaceutical development.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	openai/gpt-3.5-turbo-0125	google/gemini-flash-1.5	google/gemma-7b-it	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	google/gemini-pro	openai/gpt-4o	openai/gpt-4o	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗	N/A	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	N/A	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	true	true	true	true	true	true	true	true	true	true	true	false	false	false	false	false	false	true	true	true	true	true	true	true	true
Host association	FALSE	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Spore formation	TRUE	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓
Hemolysis	N/A	N/A	gamma	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	N/A	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus

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