Parapusillimonas granuli

General Information

Parapusillimonas granuli is a fascinating microorganism that belongs to the genus Parapusillimonas. This bacterium was first isolated from granules in a wastewater treatment plant, which highlights its potential role in environmental biotechnology. One of the most intriguing aspects of P. granuli is its ability to thrive in environments with high levels of organic matter, making it a valuable candidate for studies on biodegradation and bioremediation. The bacterium's genome has been sequenced, revealing a wealth of genetic information that could be harnessed for various biotechnological applications. For instance, the presence of genes related to the degradation of complex organic compounds suggests that P. granuli could be employed in the breakdown of pollutants or in the treatment of industrial waste. Another noteworthy feature of Parapusillimonas granuli is its adaptability to different environmental conditions, which makes it a versatile organism for research in microbial ecology. Its ability to form symbiotic relationships with other microorganisms in biofilms further underscores its ecological significance. In summary, Parapusillimonas granuli is a microorganism of considerable interest due to its potential applications in environmental biotechnology, its genetic capabilities for organic compound degradation, and its adaptability to diverse environments. These characteristics make it a valuable subject for ongoing and future research in microbial ecology and bioremediation.

Parapusillimonas granuli is a fascinating member of the microbial world, notable for its unique ecological niche and metabolic capabilities. This organism is primarily found in sedimentary environments, where it plays a crucial role in the degradation of organic matter. Its ability to thrive in such habitats makes it an important player in biogeochemical cycles, particularly in the cycling of carbon and nutrients in aquatic ecosystems. One of the most interesting aspects of P. granuli is its capacity for polyhydroxyalkanoate (PHA) production, which is a type of biopolymer that serves as a carbon and energy reserve. This characteristic not only highlights its metabolic versatility but also positions it as a potential candidate for biotechnological applications, particularly in the production of biodegradable plastics. The ability to produce PHAs from various substrates could lead to sustainable alternatives to conventional plastics, making P. granuli a valuable organism in the context of environmental sustainability. Additionally, P. granuli exhibits a remarkable adaptability to varying environmental conditions, which is essential for survival in fluctuating habitats. This adaptability can provide insights into microbial resilience and the mechanisms that allow organisms to thrive under stress, contributing to our understanding of microbial ecology and evolution. Overall, Parapusillimonas granuli stands out not only for its ecological significance but also for its potential applications in biotechnology, making it a subject of interest for researchers in both environmental science and industrial microbiology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Alcaligenaceae

Genus: Parapusillimonas

Species: Parapusillimonas granuli

NCBI ID

380911

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/202/705/GCA_014202705.1_ASM1420270v1

File for sequence-based predictions:
GCA_014202705.1_ASM1420270v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Parapusillimonas granuli is a Gram-negative bacterium that has been identified in various environmental samples, particularly in soil and sediment. While its clinical implications are not as extensively documented as those of more pathogenic organisms, it is important to note its potential role in human health and disease associations. Clinical relevance of Parapusillimonas granuli may include its involvement in the microbiome of the human gut, where it could contribute to metabolic processes and nutrient absorption. However, its exact role in health and disease remains largely unexplored. In terms of pathogenicity, there is currently limited evidence to suggest that Parapusillimonas granuli is directly associated with infections in humans. Nonetheless, its presence in clinical samples could indicate environmental exposure or contamination, warranting further investigation. Regarding antimicrobial resistance, there is no substantial data available that specifically addresses resistance mechanisms in Parapusillimonas granuli. However, as with many environmental bacteria, there is a potential for the acquisition of resistance genes, which could pose a risk in clinical settings. In summary, while Parapusillimonas granuli is not currently recognized as a significant pathogen, its role in the human microbiome and potential implications for health and disease merit further research to fully understand its clinical relevance.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Parapusillimonas granuli is a microorganism primarily associated with marine environments, particularly in sedimentary habitats where it plays a crucial role in nutrient cycling. This organism thrives in anoxic conditions, often found in the interstitial waters of sediments, where it contributes to the degradation of organic matter. Its presence is significant in the benthic zone, where it interacts with other microorganisms and contributes to the overall health of the ecosystem. In these marine sediments, Parapusillimonas granuli engages in symbiotic relationships with other microbial communities, facilitating the breakdown of complex organic compounds. This process not only aids in nutrient availability for other organisms but also helps in maintaining the biogeochemical cycles essential for the ecosystem's balance. Additionally, this microorganism exhibits remarkable environmental adaptations, allowing it to survive in varying salinity and temperature conditions typical of coastal and estuarine environments. Its metabolic versatility enables it to utilize a range of substrates, making it a key player in the microbial loop that supports higher trophic levels in the food web. Overall, Parapusillimonas granuli is an integral component of its biome, contributing to the ecological dynamics of marine sediments and influencing the health and sustainability of the marine ecosystem.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Parapusillimonas granuli has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Parapusillimonas granuli is utilized in biodegradation processes. This organism is capable of breaking down complex organic compounds, making it valuable for the treatment of industrial waste and the remediation of contaminated environments. Its ability to degrade pollutants can be harnessed in waste management strategies, particularly in the treatment of wastewater and the detoxification of hazardous materials. In the realm of biofuel production, Parapusillimonas granuli can play a role in the conversion of biomass into biofuels through fermentation processes. By utilizing its metabolic pathways, this microorganism can help in the efficient breakdown of organic matter, leading to the production of bioethanol or biogas, thus contributing to sustainable energy solutions. Furthermore, there is potential for Parapusillimonas granuli in pharmaceutical development. Its unique enzymatic activities may be explored for the production of bioactive compounds or as a source of novel enzymes that can be used in drug synthesis or as therapeutic agents. Overall, the versatility of Parapusillimonas granuli in these applications highlights its importance in advancing green technologies and promoting environmental sustainability.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	mistralai/mixtral-8x7b-instruct:nitro	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	openchat/openchat-7b	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	google/gemini-pro-1.5	google/gemini-pro-1.5	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	N/A	false	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	false	false	true	true
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerotolerant ✗	aerotolerant ✗	anaerobic ✗	anaerobic ✗	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	false	false	true	true	true	true	true	true	false	false
Animal pathogenicity	TRUE	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	false	false	true	false	false	false	false	false	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false
Host association	N/A	true	false	true	true	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗

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