Pseudomonas synxantha

General Information

Pseudomonas synxantha is a fascinating microorganism belonging to the genus Pseudomonas, which is known for its metabolic diversity and ecological versatility. One of the most intriguing aspects of Pseudomonas synxantha is its ability to produce a distinctive yellow pigment, which is a characteristic feature of this species. This pigment production can be of significant interest in various fields, including biotechnology and environmental science. Ecological Role and Environmental Adaptability: Pseudomonas synxantha is commonly found in soil and water environments, where it plays a crucial role in nutrient cycling and organic matter decomposition. Its ability to thrive in diverse environmental conditions makes it a valuable model organism for studying microbial ecology and environmental microbiology. Biotechnological Potential: The metabolic capabilities of Pseudomonas synxantha are noteworthy. It can degrade a wide range of organic compounds, including pollutants, which highlights its potential use in bioremediation. The organism's enzymatic machinery can be harnessed for the breakdown of environmental contaminants, making it a promising candidate for cleaning up polluted sites. Antimicrobial Properties: Another interesting feature of Pseudomonas synxantha is its production of secondary metabolites with antimicrobial properties. These compounds can inhibit the growth of other microorganisms, which could be explored for developing new antibiotics or biocontrol agents in agriculture. Genomic Insights: Advances in genomic sequencing have provided deeper insights into the genetic makeup of Pseudomonas synxantha. The genome reveals a wealth of genes involved in metabolic pathways, stress response, and secondary metabolite production. Understanding these genetic elements can lead to the development of novel applications in medicine, agriculture, and industry. In summary, Pseudomonas synxantha is a microorganism of significant interest due to its pigment production, metabolic diversity, and potential applications in bioremediation and antimicrobial development. Its adaptability and ecological importance further underscore its value in scientific research and practical applications.

Pseudomonas synxantha is a fascinating bacterium known for its unique metabolic capabilities and ecological significance. This species is particularly interesting due to its ability to degrade a wide range of organic compounds, making it a valuable organism in bioremediation efforts. Its metabolic versatility allows it to thrive in diverse environments, including soil and water, where it can utilize pollutants as carbon sources. This characteristic positions Pseudomonas synxantha as a potential candidate for environmental cleanup applications, especially in areas contaminated with hydrocarbons and other organic pollutants. Another remarkable feature of Pseudomonas synxantha is its production of secondary metabolites, including pigments such as pyoverdine, which not only contribute to its distinctive coloration but also play a role in iron chelation. This ability to sequester iron is crucial for its survival in iron-limited environments, showcasing its adaptability. Furthermore, the study of these pigments has implications in understanding microbial interactions and competition in natural ecosystems. Research on Pseudomonas synxantha also highlights its potential in agricultural applications. Its ability to promote plant growth through mechanisms such as nutrient solubilization and production of plant growth-promoting substances makes it a candidate for use as a biofertilizer. This aspect underscores the organism's dual role in both environmental sustainability and agricultural productivity. Overall, Pseudomonas synxantha stands out not only for its ecological roles but also for its potential applications in biotechnology and environmental science, making it a subject of ongoing research interest.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas synxantha

NCBI ID

47883

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/851/555/GCF_003851555.1_ASM385155v1

File for sequence-based predictions:
GCF_003851555.1_ASM385155v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas synxantha is a member of the Pseudomonas genus, which is known for its environmental versatility and potential pathogenicity. While Pseudomonas synxantha is not as widely studied as other species in the genus, it has been associated with various clinical implications. It is primarily recognized for its role in plant pathology, but its interactions with human health are of growing interest. In terms of disease associations, Pseudomonas synxantha has been implicated in opportunistic infections, particularly in immunocompromised individuals. It can cause infections in wounds, respiratory tracts, and urinary tracts, although these cases are less common compared to other Pseudomonas species like Pseudomonas aeruginosa. Pathogenicity is attributed to its ability to produce a range of virulence factors, including exoenzymes and toxins that can damage host tissues and evade the immune response. The organism's capacity to form biofilms enhances its survival in hostile environments, making it more resistant to antimicrobial treatments. Regarding antimicrobial resistance, Pseudomonas synxantha may exhibit resistance mechanisms similar to those of its relatives, including the production of beta-lactamases and efflux pumps, which can complicate treatment options. In terms of medical applications, while Pseudomonas synxantha itself is not commonly used as a probiotic or therapeutic agent, its relatives in the Pseudomonas genus are being explored for their potential in bioremediation and as biofertilizers. Understanding the ecological roles and interactions of Pseudomonas synxantha may provide insights into its potential benefits and risks in both environmental and clinical settings. Overall, while Pseudomonas synxantha is not a primary pathogen, its presence in clinical samples warrants attention due to its potential to cause infections and its implications for antimicrobial resistance.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas synxantha is a versatile bacterium commonly found in a variety of habitat types, particularly in soil and water environments. This microorganism thrives in nutrient-rich conditions, often associated with decaying organic matter, where it plays a crucial role in the decomposition process. Its ability to degrade a wide range of organic compounds makes it an important player in nutrient cycling within these ecosystems. Soil Biomes: In terrestrial ecosystems, Pseudomonas synxantha is frequently isolated from agricultural soils and rhizospheres of plants. Here, it engages in nutrient mobilization, enhancing the availability of essential elements like nitrogen and phosphorus for plant uptake. This interaction not only supports plant health but also contributes to soil fertility, making it a vital component of sustainable agricultural practices. Aquatic Environments: In freshwater and marine ecosystems, Pseudomonas synxantha can be found in lakes, rivers, and coastal waters. It is known for its role in the biodegradation of pollutants, including hydrocarbons, which underscores its potential in bioremediation efforts. By breaking down these contaminants, it helps maintain the health of aquatic environments and supports the overall balance of microbial communities. Additionally, Pseudomonas synxantha exhibits symbiotic relationships with various plant species, promoting growth and resistance to pathogens. Its adaptability to different environmental conditions, including varying pH levels and temperatures, further enhances its ecological significance. Overall, this microorganism exemplifies the intricate connections within ecosystems, highlighting its role in both biogeochemical cycles and plant-microbe interactions.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas synxantha has shown significant potential in various industrial applications due to its versatile metabolic capabilities. One of the primary areas of interest is in biotechnology, where Pseudomonas synxantha is utilized in fermentation processes to produce valuable metabolites. This organism can be engineered to enhance the production of biochemicals, such as organic acids and amino acids, which are essential in food and pharmaceutical industries. In the realm of waste management, Pseudomonas synxantha plays a crucial role in biodegradation processes. It has the ability to degrade a variety of environmental pollutants, including hydrocarbons and heavy metals, making it a valuable asset in bioremediation efforts. This capability allows for the effective treatment of contaminated soils and water, contributing to environmental sustainability. Furthermore, Pseudomonas synxantha is being explored for its potential in biofuel production. Its metabolic pathways can be harnessed to convert biomass into biofuels through fermentation processes, thereby providing a renewable energy source and reducing reliance on fossil fuels. In pharmaceutical development, the organism's enzymatic activities are of particular interest. Pseudomonas synxantha can produce various enzymes that are useful in drug synthesis and the development of therapeutic agents. These enzymes can facilitate specific chemical reactions, leading to the creation of complex molecules that are often difficult to synthesize through traditional chemical methods. Overall, the diverse applications of Pseudomonas synxantha in biotechnology, waste management, biofuel production, and pharmaceutical development highlight its importance as a versatile microorganism in industrial processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	google/gemini-pro	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	google/gemma-7b-it	google/gemma-7b-it	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	google/gemini-flash-1.5	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat
Motility	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	false	false	true	false	false	false	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true
Host association	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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