Paraburkholderia graminis

General Information

Paraburkholderia graminis is a fascinating microorganism that belongs to the genus Paraburkholderia. This bacterium is particularly interesting due to its plant growth-promoting properties. It has been isolated from the rhizosphere of various plants, where it plays a crucial role in enhancing plant health and growth. One of the key features of P. graminis is its ability to fix atmospheric nitrogen, making it a valuable asset in sustainable agriculture by reducing the need for chemical fertilizers. Additionally, Paraburkholderia graminis is known for its bioremediation potential. It can degrade a variety of environmental pollutants, including aromatic compounds, which makes it a promising candidate for cleaning up contaminated soils and water bodies. This capability is attributed to its diverse metabolic pathways and the presence of specific enzymes that can break down complex organic molecules. From a research perspective, P. graminis is also notable for its genomic versatility. The genome of this bacterium contains numerous genes associated with secondary metabolite production, which could lead to the discovery of novel antibiotics or other bioactive compounds. This genetic diversity not only underscores its adaptability to different environmental conditions but also its potential in biotechnology applications. In summary, Paraburkholderia graminis stands out due to its plant growth-promoting abilities, bioremediation potential, and genomic richness, making it a valuable subject of study in both environmental and agricultural sciences.

Paraburkholderia graminis is a fascinating bacterium primarily known for its role in the rhizosphere of various plants, particularly grasses. This organism is notable for its ability to promote plant growth through mechanisms such as nitrogen fixation and the production of plant growth-promoting substances. Its unique metabolic capabilities allow it to thrive in diverse environments, making it a valuable subject of study in agricultural microbiology. One of the most interesting aspects of P. graminis is its symbiotic relationship with plants, which enhances nutrient uptake and improves plant resilience against environmental stresses. This characteristic positions P. graminis as a potential candidate for biofertilizer development, contributing to sustainable agricultural practices. Additionally, P. graminis has been studied for its biocontrol properties against various plant pathogens. The ability to inhibit the growth of harmful microorganisms makes it a promising agent in integrated pest management strategies. Furthermore, research into the genomic and metabolic pathways of P. graminis has revealed insights into its adaptability and survival strategies in competitive environments. This knowledge can be leveraged to enhance its beneficial traits through biotechnological approaches, potentially leading to improved crop yields and health. In summary, Paraburkholderia graminis stands out due to its plant growth-promoting abilities, biocontrol potential, and adaptability, making it a significant organism in the fields of microbiology, agriculture, and environmental science.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Paraburkholderia

Species: Paraburkholderia graminis

NCBI ID

60548

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/330/785/GCF_003330785.1_ASM333078v1

File for sequence-based predictions:
GCF_003330785.1_ASM333078v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Paraburkholderia graminis is primarily known for its role in plant pathology, particularly affecting grasses and crops. However, its clinical implications in human health are emerging, particularly in relation to infections in immunocompromised individuals. Clinical relevance includes its potential to cause opportunistic infections such as pneumonia and bacteremia, especially in patients with underlying health conditions. The organism exhibits pathogenicity through its ability to evade the immune response, utilizing various mechanisms to survive within host tissues. Furthermore, there are concerns regarding antimicrobial resistance, as some strains of Paraburkholderia graminis have shown resistance to multiple classes of antibiotics, complicating treatment options. While research is ongoing, the potential for this organism to be involved in outbreaks, particularly in healthcare settings, underscores the need for vigilance in monitoring its presence and impact on human health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Paraburkholderia graminis is primarily associated with grassland ecosystems and agricultural fields, where it plays a significant role in the nitrogen cycle. This microorganism is often found in the rhizosphere of various grass species, thriving in the soil that supports these plants. Its ability to fix nitrogen makes it a crucial player in enhancing soil fertility, particularly in nutrient-poor environments. In these grassland biomes, Paraburkholderia graminis forms symbiotic relationships with the roots of grasses, promoting plant growth and health. This symbiosis not only benefits the plants by providing essential nutrients but also helps stabilize the soil structure, reducing erosion and improving water retention. Additionally, Paraburkholderia graminis can be found in wetlands and riparian zones, where it contributes to the ecological balance by participating in the breakdown of organic matter and cycling of nutrients. Its presence in these environments supports a diverse range of flora and fauna, highlighting its importance in maintaining biodiversity. Overall, Paraburkholderia graminis exemplifies the intricate relationships within terrestrial ecosystems, showcasing its adaptability and essential role in promoting ecological health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Paraburkholderia graminis has shown significant potential in various industrial applications. One of the primary areas is in biotechnology, where it is utilized for fermentation processes to produce valuable metabolites. This organism is known for its ability to degrade complex organic compounds, making it a candidate for waste management solutions, particularly in the treatment of contaminated soils and water. Its enzymatic activity allows it to break down pollutants, thus facilitating biodegradation and contributing to environmental cleanup efforts. In the realm of biofuel production, Paraburkholderia graminis can be involved in the conversion of biomass into biofuels through fermentation, enhancing the efficiency of bioethanol production. Additionally, its metabolic pathways are being explored for the development of sustainable energy sources. Furthermore, this microorganism has potential applications in pharmaceutical development, where its unique metabolic capabilities can be harnessed to produce bioactive compounds. The ability of Paraburkholderia graminis to synthesize various secondary metabolites can lead to the discovery of new drugs or therapeutic agents. Overall, the versatility of Paraburkholderia graminis in these industrial sectors highlights its importance as a valuable microorganism in modern biotechnology and environmental management.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	google/gemma-7b-it	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	mistralai/mistral-7b-instruct	google/gemini-pro	google/gemini-flash-1.5	google/gemini-flash-1.5	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	N/A	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	false	false
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain positive ✗
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biofilm formation	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	false	false	false	false
Host association	TRUE	false ✗	false ✗	false ✗	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Plant pathogenicity	FALSE	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Spore formation	N/A	false	false	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Hemolysis	gamma	N/A	N/A	alpha ✗	N/A	N/A	N/A	N/A	N/A	N/A	gamma ✓	gamma ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	N/A	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	coccus	coccus

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