Vibrio rumoiensis

General Information

Vibrio rumoiensis is a fascinating microorganism that belongs to the genus Vibrio, which is well-known for its diverse and ecologically significant species. One of the most intriguing aspects of Vibrio rumoiensis is its ability to thrive in cold environments, making it a psychrophilic bacterium. This characteristic is particularly valuable for research into cold-adaptation mechanisms, which can have applications in biotechnology and understanding microbial life in extreme conditions. Another notable feature of Vibrio rumoiensis is its bioluminescent properties. Like some other members of the Vibrio genus, this species can produce light through a biochemical reaction involving the enzyme luciferase. This bioluminescence is not only a captivating natural phenomenon but also has practical applications in scientific research, such as in the development of biosensors and in the study of gene expression. Additionally, Vibrio rumoiensis has been studied for its potential in bioremediation. Its ability to degrade certain pollutants makes it a candidate for cleaning up contaminated environments, particularly in cold regions where other bacteria might not survive. This environmental application underscores the organism's ecological importance and potential utility in sustainable practices. Overall, Vibrio rumoiensis stands out due to its cold-adaptation, bioluminescence, and bioremediation potential, making it a valuable subject for ongoing and future research in various scientific fields.

Vibrio rumoiensis is a fascinating marine bacterium that was first isolated from seawater in the vicinity of Rumoi, Hokkaido, Japan. This organism is particularly interesting due to its halophilic nature, thriving in environments with high salt concentrations, which makes it a valuable model for studying salt tolerance mechanisms in bacteria. Its ability to adapt to extreme osmotic conditions provides insights into the evolutionary strategies of marine microorganisms. One of the unique aspects of Vibrio rumoiensis is its potential for biotechnological applications. The organism has been studied for its ability to produce various enzymes, including those that can degrade complex organic materials, which could be harnessed for bioremediation purposes. This characteristic positions Vibrio rumoiensis as a candidate for environmental cleanup efforts, particularly in marine ecosystems affected by pollution. Additionally, Vibrio rumoiensis is part of the larger Vibrio genus, which includes several species known for their pathogenic potential. However, Vibrio rumoiensis itself has not been associated with human disease, making it a safer subject for research compared to its more notorious relatives. This aspect allows researchers to explore the ecological roles of Vibrio species without the immediate concerns of pathogenicity. Furthermore, the organism's genetic and metabolic pathways are of interest for studies in microbial ecology and evolution. Understanding how Vibrio rumoiensis interacts with its environment and other microorganisms can shed light on the dynamics of marine microbial communities. Overall, Vibrio rumoiensis stands out as a valuable organism for both ecological research and potential biotechnological innovations.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Vibrionales

Family: Vibrionaceae

Genus: Vibrio

Species: Vibrio rumoiensis

NCBI ID

76258

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/218/045/GCF_002218045.2_ASM221804v2

File for sequence-based predictions:
GCF_002218045.2_ASM221804v2_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The bacterium Vibrio rumoiensis is a member of the Vibrio genus, which is known for its association with aquatic environments and its potential to cause infections in humans. While Vibrio rumoiensis is less studied compared to other Vibrio species like Vibrio cholerae, it has been isolated from marine environments and is believed to have implications for human health, particularly in coastal regions. Clinical relevance includes its potential role in gastroenteritis and wound infections, especially in individuals with compromised immune systems or those exposed to contaminated water. The organism's pathogenicity may be linked to its ability to produce virulence factors that facilitate colonization and invasion of host tissues. Furthermore, there is a growing concern regarding antimicrobial resistance among Vibrio species, including Vibrio rumoiensis. Resistance to commonly used antibiotics can complicate treatment options for infections caused by this organism. Understanding its resistance mechanisms is crucial for developing effective therapeutic strategies. In terms of immune evasion, Vibrio rumoiensis may employ strategies similar to other Vibrio species, such as the production of biofilms and the secretion of factors that inhibit the host's immune response. This ability to evade the immune system can lead to more severe infections and complications. While there are no specific vaccines or probiotics currently associated with Vibrio rumoiensis, ongoing research into the Vibrio genus may yield insights that could inform future medical applications. Overall, the clinical implications of Vibrio rumoiensis underscore the importance of monitoring and understanding this organism in the context of public health, particularly in relation to outbreaks linked to seafood consumption or exposure to contaminated water.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Vibrio rumoiensis is a marine bacterium commonly found in coastal waters and estuarine environments. This microorganism thrives in brackish waters, where the salinity levels fluctuate, making it well-adapted to varying conditions. Its presence is often associated with sediment-rich areas and mangrove ecosystems, where it plays a crucial role in nutrient cycling and organic matter decomposition. In these biomes, Vibrio rumoiensis engages in symbiotic relationships with various marine organisms, including fish and invertebrates. It can contribute to the health of its hosts by aiding in digestion and enhancing nutrient absorption. Additionally, this bacterium is known for its ability to degrade organic pollutants, thus playing a significant role in bioremediation processes within its habitat. The adaptability of Vibrio rumoiensis to different salinity levels and its metabolic versatility allow it to occupy a unique ecological niche, making it an important player in the marine food web. Its interactions with other microorganisms and larger marine life underscore its significance in maintaining the balance of these delicate ecosystems.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Vibrio rumoiensis has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for its ability to produce enzymes that can be harnessed in various biochemical processes. For instance, Vibrio rumoiensis is known for its enzyme production, which can be applied in the food industry for the breakdown of complex carbohydrates, enhancing the flavor and texture of fermented products. In the realm of waste management, Vibrio rumoiensis has demonstrated capabilities in biodegradation, particularly in the breakdown of pollutants in marine environments. This characteristic makes it a candidate for bioremediation efforts, where it can help in the detoxification of contaminated water bodies, thus contributing to environmental sustainability. Furthermore, the organism has potential in biofuel production. Its metabolic pathways can be exploited in fermentation processes to convert organic materials into biofuels, such as ethanol or biodiesel, providing a renewable energy source. This application is particularly relevant in the context of reducing reliance on fossil fuels and promoting cleaner energy alternatives. In pharmaceutical development, Vibrio rumoiensis may also play a role due to its production of bioactive compounds that could lead to the discovery of new drugs or therapeutic agents. The exploration of its secondary metabolites could yield novel antibiotics or other pharmaceuticals, addressing the growing concern of antibiotic resistance. Overall, Vibrio rumoiensis presents a multifaceted opportunity across various industries, particularly in biotechnology, waste management, biofuel production, and pharmaceutical development, showcasing its versatility and importance in modern industrial applications.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	openai/gpt-4o	openai/gpt-4o	meta-llama/llama-3-70b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro	anthropic/claude-3.5-sonnet	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	google/gemini-flash-1.5	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	google/gemma-7b-it	google/gemma-7b-it	google/gemini-pro-1.5	google/gemini-pro-1.5	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b
Motility	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Gram staining	gram stain negative	N/A	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	true	true	true	false	true	false	true	true	false	true	false	false	false	false	true	true	true	true	true	true	false	false	true	true	true	true	true	true
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	false	true	true	false	true	false	false	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	beta	beta	beta	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	beta	beta	beta	beta	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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