Gordonia amicalis

General Information

Gordonia amicalis is a fascinating microorganism belonging to the genus Gordonia, which is known for its diverse metabolic capabilities and environmental resilience. One of the most intriguing aspects of G. amicalis is its ability to degrade a wide range of complex organic compounds, including pollutants such as polycyclic aromatic hydrocarbons (PAHs) and rubber. This makes it a valuable candidate for bioremediation efforts aimed at cleaning up contaminated environments. Additionally, G. amicalis has been studied for its potential in biotechnological applications, particularly in the production of bioactive compounds. The organism's metabolic pathways are of significant interest to researchers looking to harness its capabilities for industrial processes. Another unique feature of G. amicalis is its cell wall composition, which includes mycolic acids. These long-chain fatty acids contribute to the organism's robustness and ability to survive in harsh conditions, further enhancing its suitability for environmental and industrial applications. In summary, Gordonia amicalis stands out due to its remarkable degradative abilities, potential for biotechnological innovation, and resilience in extreme environments. These characteristics make it a subject of ongoing research with promising applications in various fields.

Gordonia amicalis is a fascinating actinobacterial species that has garnered attention due to its unique metabolic capabilities and ecological significance. This microorganism is particularly notable for its ability to degrade a variety of complex organic compounds, including those found in industrial waste, making it a potential candidate for bioremediation applications. Its capacity to break down pollutants such as aromatic hydrocarbons and other xenobiotics highlights its value in environmental microbiology. One of the most interesting aspects of Gordonia amicalis is its role in the degradation of polycyclic aromatic hydrocarbons (PAHs), which are notorious environmental contaminants. This ability not only contributes to the detoxification of polluted environments but also provides insights into the evolutionary adaptations of microorganisms in response to anthropogenic pressures. Additionally, Gordonia amicalis has been studied for its unique lipid composition, particularly the presence of mycolic acids, which are characteristic of the genus Gordonia. These mycolic acids contribute to the organism's resilience in harsh environments and may play a role in its interactions with other microbial communities. Furthermore, the genomic analysis of Gordonia amicalis has revealed a rich repertoire of genes associated with the degradation of various organic compounds, making it a valuable model organism for studying metabolic pathways and biotechnological applications. The insights gained from research on this species could lead to advancements in microbial biotechnology, particularly in the fields of waste management and environmental restoration. Overall, Gordonia amicalis stands out as a significant player in microbial ecology and bioremediation, offering promising avenues for future research and application.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Mycobacteriales

Family: Gordoniaceae

Genus: Gordonia

Species: Gordonia amicalis

NCBI ID

89053

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/059/885/GCA_022059885.1_ASM2205988v1

File for sequence-based predictions:
GCA_022059885.1_ASM2205988v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia amicalis is a member of the genus Gordonia, which is known for its environmental resilience and ability to degrade various organic compounds. While Gordonia amicalis is primarily recognized for its role in bioremediation, it has also been associated with human health implications. Clinical relevance arises from its potential to cause infections, particularly in immunocompromised individuals. Reports have documented cases of cutaneous infections and pulmonary infections linked to this organism, highlighting its pathogenic potential. One of the significant concerns regarding Gordonia amicalis is its antimicrobial resistance. This organism has shown resistance to multiple classes of antibiotics, which complicates treatment options for infections it may cause. The mechanisms of resistance are not fully understood but may involve the production of beta-lactamases and other efflux pumps that expel antibiotics from the bacterial cell. In terms of its interaction with the human body, Gordonia amicalis can evade the immune response through various strategies, including biofilm formation, which protects it from phagocytosis and enhances its survival in hostile environments. While there is limited information on the use of Gordonia amicalis in medical applications such as probiotics or vaccines, its environmental applications in biodegradation and bioremediation are well-documented. Further research is needed to fully understand its clinical implications and potential therapeutic uses.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Gordonia amicalis is a species of actinobacteria that is primarily associated with soil environments and wastewater treatment systems. This microorganism thrives in nutrient-rich habitats, often found in areas where organic matter is abundant, such as compost heaps and decaying plant material. Its ability to degrade complex organic compounds makes it a vital player in the biodegradation process, contributing to nutrient cycling within these ecosystems. In wastewater treatment plants, Gordonia amicalis plays a significant role in the breakdown of pollutants, particularly in the degradation of xenobiotic compounds and hydrophobic organic substances. This capability not only aids in the purification of water but also helps in the reduction of environmental contaminants, showcasing its importance in maintaining ecological balance. Furthermore, Gordonia amicalis exhibits notable interactions with other microorganisms, often engaging in synergistic relationships that enhance the overall efficiency of biodegradation processes. Its presence can promote the growth of other beneficial bacteria, leading to a more robust microbial community that is essential for the health of the soil ecosystem. Overall, Gordonia amicalis is an exemplary organism that highlights the intricate connections within terrestrial biomes and the critical roles microorganisms play in environmental sustainability.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia amicalis has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where Gordonia amicalis is utilized for its ability to degrade complex organic compounds, making it valuable in waste management processes. This organism can effectively break down pollutants such as polycyclic aromatic hydrocarbons (PAHs), which are commonly found in industrial waste, thus contributing to environmental remediation efforts. In the realm of biofuel production, Gordonia amicalis has been studied for its capacity to convert lignocellulosic biomass into fermentable sugars through enzymatic activity. This process can lead to the production of bioethanol, providing a sustainable alternative to fossil fuels. The organism's unique metabolic pathways allow it to thrive on various substrates, enhancing its utility in biofuel applications. Furthermore, Gordonia amicalis has potential in pharmaceutical development due to its ability to produce bioactive compounds. Research has indicated that this microorganism can synthesize various secondary metabolites that may have therapeutic properties, making it a candidate for further exploration in drug discovery. Overall, the versatility of Gordonia amicalis in fermentation, biodegradation, and enzyme production highlights its importance across multiple industries, particularly in enhancing sustainability and efficiency in industrial processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	google/gemini-flash-1.5	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	N/A	true	false	false	false	false	false	true	true	false	false	true	false	false	false	false	true	true	true	true	false	false	false	false	false	false	false	false
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerotolerant ✗	aerotolerant ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	true	true	true	true	true	true	true	true	true	false	false	false	false	false	false	true	true	false	false	false	false	true	true	true	true
Host association	FALSE	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	gamma	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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