Methylotuvimicrobium buryatense

General Information

Methylotuvimicrobium buryatense is a fascinating microorganism primarily due to its ability to utilize methane and methanol as its sole carbon and energy sources. This characteristic makes it a key player in the global carbon cycle and a potential tool for biotechnological applications aimed at reducing greenhouse gas emissions. One of the most intriguing aspects of M. buryatense is its metabolic versatility. It can grow on a variety of C1 compounds, which are compounds containing only one carbon atom, such as methane, methanol, and formaldehyde. This ability is facilitated by a specialized set of enzymes, including methane monooxygenase, which catalyzes the initial step in methane oxidation. Moreover, M. buryatense has garnered significant interest for its potential in bioconversion processes. Researchers are exploring its use in converting methane, a potent greenhouse gas, into valuable bioproducts like biofuels and bioplastics. This could provide a sustainable way to mitigate methane emissions from industrial and agricultural sources. Another unique feature of M. buryatense is its relatively fast growth rate compared to other methanotrophs, making it a more practical candidate for industrial applications. Its genome has been sequenced, revealing insights into its metabolic pathways and regulatory mechanisms, which further aids in the development of genetic engineering strategies to enhance its capabilities. In summary, Methylotuvimicrobium buryatense stands out due to its methane-oxidizing capabilities, metabolic flexibility, and biotechnological potential. These attributes make it a valuable organism for both environmental and industrial applications, particularly in the context of sustainable development and climate change mitigation.

Methylotuvimicrobium buryatense is a fascinating methylotrophic bacterium that thrives in extreme environments, particularly in the permafrost regions of Siberia. This organism is notable for its ability to utilize methanol and other one-carbon compounds as its sole carbon and energy sources, which positions it as a key player in the global carbon cycle. Its metabolic versatility allows it to adapt to nutrient-poor conditions, making it an interesting subject for studies on microbial ecology and biogeochemistry. One of the most remarkable features of Methylotuvimicrobium buryatense is its potential for biotechnological applications. The ability to metabolize methanol efficiently opens avenues for its use in bioconversion processes, such as the production of biofuels and other valuable chemicals. Research into this organism could lead to innovative strategies for sustainable energy production, particularly in the context of reducing greenhouse gas emissions. Additionally, Methylotuvimicrobium buryatense has been studied for its unique enzymatic pathways, which are involved in the assimilation of methanol. These pathways are of great interest to researchers aiming to understand the biochemical mechanisms of methylotrophy. The insights gained from studying this bacterium could contribute to advancements in synthetic biology and metabolic engineering. Furthermore, its resilience in extreme conditions makes it a model organism for understanding microbial survival strategies in harsh environments, which can have implications for astrobiology and the search for life on other planets. Overall, Methylotuvimicrobium buryatense stands out as a valuable organism for both fundamental research and practical applications in environmental and industrial microbiology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Methylococcales

Family: Methylococcaceae

Genus: Methylotuvimicrobium

Species: Methylotuvimicrobium buryatense

NCBI ID

95641

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/931/095/GCF_005931095.1_ASM593109v1

File for sequence-based predictions:
GCF_005931095.1_ASM593109v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Methylotuvimicrobium buryatense is a methylotrophic bacterium that has garnered interest due to its potential applications in bioremediation and its role in the carbon cycle. While it is not primarily associated with human disease, its presence in various environments, including wastewater treatment facilities, suggests a potential for environmental interactions that could impact human health indirectly. Clinical implications arise from its ability to metabolize methanol and other one-carbon compounds, which may influence microbial communities in the human gut when present in certain environments. Furthermore, the study of Methylotuvimicrobium buryatense contributes to our understanding of microbial ecology and biotechnology, particularly in the context of developing sustainable practices for waste management and carbon capture. However, there is currently limited documentation on its pathogenicity or direct associations with infections in humans. In terms of antimicrobial resistance, there is no significant evidence linking Methylotuvimicrobium buryatense to resistance mechanisms that affect human pathogens. Its role in immune evasion strategies is also not well-documented, indicating that it may not pose a direct threat to human health. Overall, while Methylotuvimicrobium buryatense is not a known pathogen, its ecological significance and potential applications in biotechnology warrant further research to fully understand its implications in human health and disease.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Methylotuvimicrobium buryatense is a methylotrophic bacterium primarily found in freshwater environments and soils rich in organic matter. This microorganism thrives in environments where methanol and other one-carbon compounds are available, making it a key player in the carbon cycle of these ecosystems. Its ability to utilize methanol as a carbon source allows it to occupy a unique ecological niche, particularly in wetlands and sediments where organic decomposition occurs. In these biomes, Methylotuvimicrobium buryatense contributes significantly to the breakdown of organic materials, facilitating nutrient cycling and enhancing soil fertility. It often engages in symbiotic relationships with other microorganisms, such as fungi and other bacteria, which can enhance the overall metabolic processes within the community. Additionally, this bacterium exhibits remarkable environmental adaptations, allowing it to survive in varying conditions, including fluctuations in temperature and nutrient availability. Its presence is crucial for maintaining the balance of microbial communities in its habitats, and it plays a vital role in the degradation of pollutants, thus contributing to bioremediation efforts in contaminated environments. Overall, Methylotuvimicrobium buryatense exemplifies the intricate connections within ecosystems and highlights the importance of microbial life in sustaining ecological health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Methylotuvimicrobium buryatense has shown significant potential in various industrial applications, particularly in the fields of biotechnology, waste management, and biofuel production. This organism is known for its ability to utilize methanol and other one-carbon compounds, making it a valuable asset in biodegradation processes. In biotechnology, Methylotuvimicrobium buryatense is utilized in the production of biopolymers and bioplastics, leveraging its metabolic pathways to convert methanol into useful products. This capability is particularly important in the development of sustainable materials that can reduce reliance on fossil fuels. In the realm of waste management, this microorganism plays a crucial role in the biodegradation of methanol-rich waste streams, effectively converting harmful substances into less toxic forms. Its application in waste treatment processes helps in mitigating environmental pollution, particularly in industrial settings where methanol is a byproduct. Furthermore, Methylotuvimicrobium buryatense has been explored for its potential in biofuel production. By utilizing its unique metabolic pathways, it can convert methanol into biofuels, contributing to the development of renewable energy sources. This process not only aids in energy production but also helps in reducing greenhouse gas emissions associated with traditional fossil fuels. Overall, the versatility of Methylotuvimicrobium buryatense in these applications highlights its importance in advancing sustainable practices across various industries.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	false	false	false	false	true	true
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain variable ✗	N/A	gram stain negative ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biofilm formation	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	true	false	true	true	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false
Host association	FALSE	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	N/A	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	coccus	coccus	bacillus	bacillus	bacillus	bacillus

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