Paraburkholderia kururiensis

General Information

Paraburkholderia kururiensis is a fascinating microorganism that has garnered significant interest in the scientific community due to its unique characteristics and potential applications. This bacterium is part of the Paraburkholderia genus, which is known for its diverse metabolic capabilities and environmental versatility. One of the most intriguing aspects of P. kururiensis is its plant growth-promoting properties. It has been shown to form beneficial associations with various plants, enhancing their growth and resilience. This makes it a valuable candidate for use in sustainable agriculture, where it can help reduce the need for chemical fertilizers and improve crop yields. Additionally, P. kururiensis exhibits a remarkable ability to degrade a wide range of environmental pollutants, including aromatic compounds and heavy metals. This bioremediation potential is particularly important in the context of environmental cleanup and pollution control. The bacterium's metabolic pathways enable it to break down complex pollutants into less harmful substances, making it a powerful tool for restoring contaminated environments. From a research perspective, P. kururiensis is also notable for its genomic plasticity. The genome of this bacterium contains numerous genes associated with horizontal gene transfer, which allows it to rapidly adapt to changing environmental conditions. This genetic flexibility is a key factor in its ability to thrive in diverse habitats and contribute to its ecological success. In summary, Paraburkholderia kururiensis stands out due to its plant growth-promoting abilities, bioremediation potential, and genomic adaptability. These characteristics make it a valuable subject of study for researchers interested in sustainable agriculture, environmental science, and microbial ecology.

Paraburkholderia kururiensis is a fascinating bacterium that was first isolated from the rhizosphere of a plant in Kururi, Japan. This organism is particularly interesting due to its ability to thrive in diverse environmental conditions, which makes it a valuable subject for studies on microbial ecology and plant-microbe interactions. Its unique metabolic capabilities allow it to degrade a variety of organic compounds, including some that are typically resistant to biodegradation. This characteristic positions P. kururiensis as a potential candidate for bioremediation applications, especially in contaminated environments where traditional methods may fail. Moreover, P. kururiensis has been noted for its symbiotic relationships with plants, enhancing nutrient uptake and promoting plant growth. This trait is of significant interest in agricultural research, particularly in the development of sustainable farming practices that leverage beneficial microorganisms to improve crop yields. The genomic analysis of P. kururiensis reveals a rich repertoire of genes associated with secondary metabolite production, which could lead to the discovery of novel bioactive compounds. Such compounds may have pharmaceutical applications, making this organism a promising target for drug discovery initiatives. In summary, Paraburkholderia kururiensis stands out due to its environmental versatility, plant growth-promoting abilities, and potential for biotechnological applications, making it a valuable organism for both ecological and applied microbiological research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Paraburkholderia

Species: Paraburkholderia kururiensis

NCBI ID

984307

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/034/424/375/GCF_034424375.1_ASM3442437v1

File for sequence-based predictions:
GCF_034424375.1_ASM3442437v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Paraburkholderia kururiensis is a member of the Burkholderia genus, which is known for its diverse ecological roles and potential clinical implications. While P. kururiensis is not as widely studied as some of its relatives, it has been isolated from various environments, including soil and plant rhizospheres, indicating its ecological versatility. Clinical relevance arises primarily from its potential pathogenicity, as some species within the Burkholderia genus are known to cause infections in immunocompromised individuals. Although specific cases of infections directly attributed to P. kururiensis are limited, its close relatives, such as Burkholderia cepacia, are notorious for causing respiratory infections in cystic fibrosis patients and other vulnerable populations. Furthermore, the organism's ability to survive in diverse environments suggests potential antimicrobial resistance mechanisms, which could complicate treatment options if it were to be implicated in human disease. The presence of genes associated with resistance to multiple classes of antibiotics in related species raises concerns about the potential for P. kururiensis to harbor similar traits. In terms of immune evasion, members of the Burkholderia genus have developed various strategies to evade host defenses, including the ability to manipulate host cell signaling pathways and resist phagocytosis. This characteristic could pose a challenge in the context of infections. While there are no well-documented medical applications of P. kururiensis as a probiotic or therapeutic agent, ongoing research into the Burkholderia genus may reveal novel insights into its potential benefits or risks in human health. Overall, while Paraburkholderia kururiensis may not currently be a major clinical concern, its ecological and genetic characteristics warrant further investigation to fully understand its implications in human health and disease.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Paraburkholderia kururiensis is a versatile bacterium primarily associated with tropical and subtropical environments, particularly in regions characterized by high humidity and warm temperatures. This microorganism is often found in soil and sediment where it plays a crucial role in nutrient cycling and organic matter decomposition. Its ability to thrive in these terrestrial biomes makes it an important player in maintaining soil health and fertility. In addition to its ecological role, Paraburkholderia kururiensis exhibits notable interactions with various plant species, often forming symbiotic relationships that enhance nutrient uptake, particularly nitrogen. This symbiosis is vital in agricultural ecosystems, where it can improve crop yields and soil quality. Furthermore, this bacterium has been documented in aquatic environments, where it contributes to the breakdown of organic materials and supports the microbial food web. Its adaptability to different habitats allows it to survive in varying conditions, showcasing its ecological significance across multiple biomes. Overall, Paraburkholderia kururiensis exemplifies the intricate connections within ecosystems, highlighting the importance of microbial life in sustaining environmental health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Paraburkholderia kururiensis has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where P. kururiensis is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes are particularly valuable in the synthesis of pharmaceuticals and other fine chemicals, enhancing the efficiency and specificity of chemical reactions. In the realm of waste management, P. kururiensis has demonstrated capabilities in biodegradation, particularly in the breakdown of environmental pollutants such as hydrocarbons. This makes it a candidate for bioremediation strategies aimed at cleaning up contaminated sites, thereby contributing to environmental sustainability. Furthermore, the organism has been explored for its role in biofuel production. Through fermentation processes, P. kururiensis can convert organic substrates into biofuels, such as ethanol, providing a renewable energy source that can help reduce reliance on fossil fuels. In pharmaceutical development, the unique metabolic pathways of P. kururiensis are being studied for the production of bioactive compounds that may have therapeutic effects. This includes the potential for developing new antibiotics or other medicinal compounds that can address emerging health challenges. Overall, Paraburkholderia kururiensis represents a versatile microorganism with promising applications across multiple industries, particularly in enhancing sustainability and efficiency in biotechnology, waste management, biofuel production, and pharmaceutical development.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro-1.5	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	google/gemini-flash-1.5	perplexity/llama-3-sonar-small-32k-chat	mistralai/mistral-7b-instruct	google/gemini-pro	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	google/gemma-7b-it	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	N/A	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	false	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	false	false
Host association	FALSE	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Plant pathogenicity	FALSE	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	N/A	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	spirillum	spirillum

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